Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0401 ATGGCAGAAGAAGCTTCCTCGCTTCACCTCATTCCCCAACAGCCCCTTTTCGACTTTGAATCTTTCGAAGGCTTCGTCTCTCATGTAAATGTTCCATCCCAAACTTCAACCTCTGATTCAAGTCCTTCCACCTCGGATATTGTTCCGCTCTCTAATTACTCCAATCTCCATGAAGATGAAAACAACCCTTTTCTCCTCCACTGTTCTACTTCGGCTCCATCAGGGTTTTTCCAGTTTGAAACCAAATCCCCCAAAAATTCCACATTAAGTCTTCGGCGACCTCCACTCAGCATCTCAGTCTCTCAGCCCACCGTTTCTCAGTCGCCGGCGGAGTCCGATTCAGGCGATATCAGGCATTATAGAGGCGTGCGCCGACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACTGCCATTGAAGGCGCCAGAGCTTATGATCGAGCTGCTTTCAAGATGCGTGGTTCCAAAGCTATTCTCAATTTCCCTCTTGAAGCTGATAATTGGTCGGGTTCTGACCCACCAGCGACATCTGGCCAGAAAAGGGAGAGAGACAGTGAGACTGAAGAGAGACAACAAGTGGAGATTAAGGTTTTAAAGCAAGAAGAGCACTAG 657 0.4962 MAEEASSLHLIPQQPLFDFESFEGFVSHVNVPSQTSTSDSSPSTSDIVPLSNYSNLHEDENNPFLLHCSTSAPSGFFQFETKSPKNSTLSLRRPPLSISVSQPTVSQSPAESDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEGARAYDRAAFKMRGSKAILNFPLEADNWSGSDPPATSGQKRERDSETEERQQVEIKVLKQEEH* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0401 218 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0401 218 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Vvi16g0401 218 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Vvi16g0401 218 PANTHER DNA-BINDING DOMAIN 69 200 IPR044808 GO:0003700|GO:0009873
Vvi16g0401 218 MobiDBLite consensus disorder prediction 86 113 - -
Vvi16g0401 218 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vvi16g0401 218 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi16g0401 218 PRINTS Ethylene responsive element binding protein signature 159 179 IPR001471 GO:0003700|GO:0006355
Vvi16g0401 218 MobiDBLite consensus disorder prediction 192 218 - -
Vvi16g0401 218 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vvi16g0401 218 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0401 218 FunFam Ethylene-responsive transcription factor 2 118 179 - -
Vvi16g0401 218 MobiDBLite consensus disorder prediction 178 218 - -
Vvi16g0401 218 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0401 Vvi-Chr16 6882836 6883492 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0401 6 217 AP2-EREBP Transcription Factor Family AT5G51190 40.930 3.49e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0401 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0401 K09286 - vvi:100263042 431.024