Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0398 ATGGCAGAAGAAGCTTCCTCGCTTCACCTCATTCACCAACAGCTCCTCTTCGACTTTGAATCTTTCGAAGGCTTCGTCTCTCATGTAAATGTTCCATCCCAAACTTCAACCTCTGATTCAAGTCCTTCCACCTCAGATATTGTTCCGCTCTCTAATTTCTCCAATCTCCATGAAGATGAAAACAACCCTTTTCTCCTCCACTGTTCTACCTCGGCTCCATCAGGGTTTTTCCAGTTTGAAACCAAATCCCCCAAAAATTCCACATTAAGTCATCGGCGACCTCCACTCAGCATCTCGGTCCCTCAGCCCACCGTTTCTCAGTCGCCGGCGGAGTCCGATTCAGGCGATATCAGGCATTATAGAGGCGTGCGCCGACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACTGCCATTGAAGGCGCCAGAGCTTATGATCGAGCTGCTTTCAAGATGCGCGGTTCCAAAGCTATTCTCAATTTCCCTCTTGAAGCTGATAATTGGTCGGGTTCTGACCCACCAGCGACATCTGGCCAGAAAAGGGAGAGAGACAGTGAGACTGAAGAGAGACAACAAGTGGAGATGAAGGTTCTAAAGCAAGAAGAGCACTTGCCGGAATCTGACTGCACACTGGCGGCAGCCAGTAATGTATTGGGGGTTTGTCCCTTAACTCCGTCAAATTGGAGGGCCGTCTGGGAGGAGGGAGACATGGAGGGAATGTTCCATCTGCCACCGTTAACGCCGTTATCACCCCATCCTTGGATAGCATATTCTCAGCTTATTGTCTGA 834 0.5072 MAEEASSLHLIHQQLLFDFESFEGFVSHVNVPSQTSTSDSSPSTSDIVPLSNFSNLHEDENNPFLLHCSTSAPSGFFQFETKSPKNSTLSHRRPPLSISVPQPTVSQSPAESDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEGARAYDRAAFKMRGSKAILNFPLEADNWSGSDPPATSGQKRERDSETEERQQVEMKVLKQEEHLPESDCTLAAASNVLGVCPLTPSNWRAVWEEGDMEGMFHLPPLTPLSPHPWIAYSQLIV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0398 277 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0398 277 MobiDBLite consensus disorder prediction 179 206 - -
Vvi16g0398 277 MobiDBLite consensus disorder prediction 82 116 - -
Vvi16g0398 277 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vvi16g0398 277 PRINTS Ethylene responsive element binding protein signature 159 179 IPR001471 GO:0003700|GO:0006355
Vvi16g0398 277 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi16g0398 277 MobiDBLite consensus disorder prediction 82 113 - -
Vvi16g0398 277 MobiDBLite consensus disorder prediction 192 206 - -
Vvi16g0398 277 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Vvi16g0398 277 PANTHER DNA-BINDING DOMAIN 83 207 IPR044808 GO:0003700|GO:0009873
Vvi16g0398 277 FunFam Ethylene-responsive transcription factor 2 118 179 - -
Vvi16g0398 277 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vvi16g0398 277 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0398 277 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0398 Vvi-Chr16 6847616 6848449 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0398 6 277 AP2-EREBP Transcription Factor Family AT5G51190 39.711 1.92e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0398 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0398 K09286 - vvi:100261260 548.125