Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0394 ATGGAAAAAGAAGCTTCAGCACTGCACTTCATCCACCAGCATCTCCTCAGCGACTTTGAATCTCTGGAAACCTTCGTCGTTAATGTAAATGAATTGTCGCAAACTTCAAGCCCTGAATCAGGTGTTTCCACCACAGATGTTGAGGTTTCTGATTACTTCAAAGTACATGACGACGAATGCTCTACCTCTACTTCATCTGGGTTGTTCCAGTTTGAGACCAAATCCCCAAAACTTTCCAAATTAAGTCATCGGCGACCTTCACTGTGCATCTCAGTTCCTCCGCCGCCGATTCCTCAGCTCCCGGCGGAGTCCGATCCCGGCGATGCCAGGCATTACAGAGGCGTGCGACGACGACCGTGGGGGAAATTCGCGGCGGAGATTAGAGACCCAAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACAGCCATTGAAGCAGCTAGAGCTTATGATCGAGCTGCTTTCAAGATGCGTGGCTCCAAAGCTATCCTTAATTTCCCTCTTGAAGCTGGGAATTTGTCGTGTTCTGACCCGACGGTGATATCCGGCCGGAAAAGGCAGAGAGAGTGCGAGAGTGGAGAGAGAGAGCAAGCAGAGACTAAGGTTTTAAAGCAAGAGGAGCAGCTGCCGGATTCTGACTGCAATCTTGCGGCGGCCAGTGTTTTTGGGATCAGTCCGTTAATGCCGTCAAGTTGGAGGACCATTTGGGAGGGGAAAGCCACGGACGGAATATTCAATTTGCCACCGTTGACGCCGTTATCACCCCATCCTTGGATTGGATATTCCCAGCTTATAGTCTGA 807 0.5068 MEKEASALHFIHQHLLSDFESLETFVVNVNELSQTSSPESGVSTTDVEVSDYFKVHDDECSTSTSSGLFQFETKSPKLSKLSHRRPSLCISVPPPPIPQLPAESDPGDARHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKMRGSKAILNFPLEAGNLSCSDPTVISGRKRQRECESGEREQAETKVLKQEEQLPDSDCNLAAASVFGISPLMPSSWRTIWEGKATDGIFNLPPLTPLSPHPWIGYSQLIV* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0394 268 SMART rav1_2 111 175 IPR001471 GO:0003700|GO:0006355
Vvi16g0394 268 SUPERFAMILY DNA-binding domain 111 170 IPR016177 GO:0003677
Vvi16g0394 268 MobiDBLite consensus disorder prediction 90 113 - -
Vvi16g0394 268 ProSiteProfiles AP2/ERF domain profile. 111 169 IPR001471 GO:0003700|GO:0006355
Vvi16g0394 268 PANTHER DNA-BINDING DOMAIN 75 196 IPR044808 GO:0003700|GO:0009873
Vvi16g0394 268 Gene3D AP2/ERF domain 110 171 IPR036955 GO:0003700|GO:0006355
Vvi16g0394 268 MobiDBLite consensus disorder prediction 189 208 - -
Vvi16g0394 268 CDD AP2 111 169 IPR001471 GO:0003700|GO:0006355
Vvi16g0394 268 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Vvi16g0394 268 PRINTS Ethylene responsive element binding protein signature 151 171 IPR001471 GO:0003700|GO:0006355
Vvi16g0394 268 FunFam Ethylene-responsive transcription factor 2 110 171 - -
Vvi16g0394 268 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0394 Vvi-Chr16 6743260 6744066 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0394 6 268 AP2-EREBP Transcription Factor Family AT5G51190 42.164 1.07e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0394 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0394 K09286 - vvi:100244353 520.776