Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0393 ATGGCAGAAGAAGCTTCCTCGCTTCACCTCATTCACCAACAGCTCCTCTTCGACTTTGAATCTTTCGAAAGCTTTGTCTCTCATGTAAATGATCCATCCCAAACTTCGACCTCTGATTCAAGTCCTTCCACCTCAGATATTATTCCGCTCTCTGATTACTCGAATCTCCATGAAGATGAAAACAACCCTTTTCTCCTCCACTGTTCTACTTCGGCTCCATCAGGGTTTTGCCAGTTTGAAACCAAATCCCCCAAATATTCCACATTAAGTCATCGGCGACCTCCACTCAGCATCTCGGTTCCTCAGCCCACCGTTTCTCAGTCGCCGGCGGAGTCCGATTCAGGCGATATCAGGCATTATAGAGGCGTGCGCCGACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACTGCCATTGAAGGCGCCAGAGCTTATGATCGAGCTGCTTTCAAGATGCGTGGTTCCAAAGCTATTCTCAATTTCCCTCTTGAAGCTGATAATTGGTCGGGTTCTGATCCACCAGCGACATCTGGCCAGAAAAGGGTGAGAGAAAGTGAGGGTGAAGAGAGAGAACAAGTGGAAATTAAGGTTTTGAAGCAGGAGGAGCAGTCGCCGGAATCTGAGAGCACGGTGGCGGGGGCAACGAGTAATGTTTTGGGGATTGGTCCGTTAACTCCGTCAAATTGGAGGGCCGTGTGGGAGGAGAGAGAGATGGAAGGAATATTCAAGTTGCCACCGTTAACGCCGTTATCACCACATCCTTGGTTAGGATATTCTCAGCTTATAGTTTGA 837 0.4982 MAEEASSLHLIHQQLLFDFESFESFVSHVNDPSQTSTSDSSPSTSDIIPLSDYSNLHEDENNPFLLHCSTSAPSGFCQFETKSPKYSTLSHRRPPLSISVPQPTVSQSPAESDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEGARAYDRAAFKMRGSKAILNFPLEADNWSGSDPPATSGQKRVRESEGEEREQVEIKVLKQEEQSPESESTVAGATSNVLGIGPLTPSNWRAVWEEREMEGIFKLPPLTPLSPHPWLGYSQLIV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0393 278 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0393 278 MobiDBLite consensus disorder prediction 194 208 - -
Vvi16g0393 278 MobiDBLite consensus disorder prediction 179 208 - -
Vvi16g0393 278 MobiDBLite consensus disorder prediction 86 113 - -
Vvi16g0393 278 PANTHER DNA-BINDING DOMAIN 75 218 IPR044808 GO:0003700|GO:0009873
Vvi16g0393 278 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vvi16g0393 278 PRINTS Ethylene responsive element binding protein signature 159 179 IPR001471 GO:0003700|GO:0006355
Vvi16g0393 278 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi16g0393 278 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Vvi16g0393 278 FunFam Ethylene-responsive transcription factor 2 118 179 - -
Vvi16g0393 278 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vvi16g0393 278 MobiDBLite consensus disorder prediction 29 53 - -
Vvi16g0393 278 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0393 278 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Vvi16g0393 278 MobiDBLite consensus disorder prediction 86 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0393 Vvi-Chr16 6726580 6741072 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0393 6 278 AP2-EREBP Transcription Factor Family AT5G51190 39.209 5.09e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi16g0393 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0393 K09286 - vvi:100254616 503.827