Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0391 ATGGTCCCTCCACAGATTAAAGAATGTATATACGAACCCTACTTTTTTCAATGGAAAGAAGCTCCATTCCCCCAACCAGGAACCTCATCCGAAACCTCCTCTCTCTATCTAAGATGTTACGCACAACTCTCTTCATCACTGCACCTCATCCACCAACTACTCCTCTCCGACTTTCAATCTTTCGAAAATTTAAATGATCCATCCCAAACTTCAACCTCTGATTCCAGTGTTTCCACCTCAGATGTTATTCCGCTCTCTAATTACTTCGATCTCCATGAAGATGAAAACAACCCCTTTCTCCTCCACTGTTCTACTTCTGCTCCGTCTGGGTTTTTCCAGTTTGAATCCAAATCCCCCAAAGCTTCCAGATTAAGTCGTCGACGACCTCCACTCAGCATCTCAGTTTCTCAGCCAACCATTCCTCAGTTGCCGGCGGATTCCGATTCAGGCGACGTCAAGCATTATAGGGGGGTACGGCGTCGTCCGTGGGGGAAATTTGCGGCGGAGATCCGAGATGCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACTGCCATTGAAGCCGCCAGAGCTTATGATCGAGCTGCTTTCGAGATGCGTGGTTCCAAAGCTATTCTCAATTTCCCTCTTGAAGCTGGGAATTGGTCGGGTTCTGACCCACCAGCGATATCTGGCCCGAAAAGGGAGCGAGAGAGTGAGAGTGAAGAGAGAGAACAAGTGGAGACGAAGGTTTTAAAGCAGGAGGAGCAGTCGCCGGAATCTGACAGTACGGTGGCGGGGCCAACCAGAGAGAGAGATGGAGAGAATATTCAAGCTGCCACCGTTAACGCCGTTATCACCACATCCTTGGTTAGGATATTCTCAGCTTATAGTTTGAGGAGAGGGTGTGCTTTGACTGTAATTATTGAATTTGTTCATTCATTTAATAATTCGTCATTTTAG 951 0.4774 MVPPQIKECIYEPYFFQWKEAPFPQPGTSSETSSLYLRCYAQLSSSLHLIHQLLLSDFQSFENLNDPSQTSTSDSSVSTSDVIPLSNYFDLHEDENNPFLLHCSTSAPSGFFQFESKSPKASRLSRRRPPLSISVSQPTIPQLPADSDSGDVKHYRGVRRRPWGKFAAEIRDANRRGSRVWLGTFETAIEAARAYDRAAFEMRGSKAILNFPLEAGNWSGSDPPAISGPKRERESESEEREQVETKVLKQEEQSPESDSTVAGPTRERDGENIQAATVNAVITTSLVRIFSAYSLRRGCALTVIIEFVHSFNNSSF* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0391 316 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Vvi16g0391 316 CDD AP2 153 212 IPR001471 GO:0003700|GO:0006355
Vvi16g0391 316 PRINTS Ethylene responsive element binding protein signature 178 194 IPR001471 GO:0003700|GO:0006355
Vvi16g0391 316 PRINTS Ethylene responsive element binding protein signature 155 166 IPR001471 GO:0003700|GO:0006355
Vvi16g0391 316 PANTHER DNA-BINDING DOMAIN 80 254 IPR044808 GO:0003700|GO:0009873
Vvi16g0391 316 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
Vvi16g0391 316 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
Vvi16g0391 316 FunFam Ethylene-responsive transcription factor 2 153 214 - -
Vvi16g0391 316 MobiDBLite consensus disorder prediction 227 253 - -
Vvi16g0391 316 MobiDBLite consensus disorder prediction 219 272 - -
Vvi16g0391 316 Pfam AP2 domain 154 204 IPR001471 GO:0003700|GO:0006355
Vvi16g0391 316 MobiDBLite consensus disorder prediction 129 144 - -
Vvi16g0391 316 MobiDBLite consensus disorder prediction 120 154 - -
Vvi16g0391 316 SUPERFAMILY DNA-binding domain 154 213 IPR016177 GO:0003677
Vvi16g0391 316 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0391 Vvi-Chr16 6692473 6693594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0391 122 265 AP2-EREBP Transcription Factor Family AT5G51190 51.020 6.52e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0391 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0391 K09286 - vvi:100264915 389.808