Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0390 ATGGCAGAAGAGGCTTCATCGGTTCACTTCATTCACCAACAACTTCTCTTCGACTTTGAAGCTTTCGAAAGCTTCGTCTCTCATGTAAATGATCCATCCCAAACTTCAACCTCTGATTCGAGTGCTTCCACCTCAGATATTAATCCGCTCTCTAATTACTTCAATCCCCATGAAGATGAAAACAACCCCTCTCTCCTCCACTGTTCTACCTCTGCTCCGTCTGGCTTTTTCCAGCTTCAAACCAAATCCCCCAAAACTTCCACATTAAGTCATCGGCGACCTCCACTCAGCATCTCAGTCCCTCAGCCCACCGTTTCTCAGTCACCGGCGGAGTCCGATTCAGGCGATATCAGGCATTACAGAGGCGTGAGGAGACGGCCATGGGGGAAATTTGCGGCGGAGATTCGAGACCCGAATCGGAGAGGATCGAGGGTATGGCTGGGGACATTCGAGACTGCCATTGAAGCCGCCAGAGCTTATGATCGAGCTGCTTTTGAGATGCGTGGCTCCAAAGCTATTCTCAATTTCCCCCTTGAAGCTGATAATTGGTCGGGATCTGATCCACCAGCGATATCTGGCCGGAAAAGGGAGAGAGACAGTGAGACTGAAGAGAGACAACAAGTGGAGATTAAGGTTTTAAAGCAAGAGGAGTACTTGCCCGAATCCGACAGCACGCTGGCGGCAGCCAGTCATGTTTTAGGGGTTAGTCCGTTAACTCCGTCAAACTTTAGGGCCGGCTGGGAGGAGAGAGAGATGGAGGGAATATTCCATCTGCCACCGTTAACGCCGTTATCACCCCATCCTTGGATAGCATATTCTCAGCTTATAGTTTGA 834 0.5 MAEEASSVHFIHQQLLFDFEAFESFVSHVNDPSQTSTSDSSASTSDINPLSNYFNPHEDENNPSLLHCSTSAPSGFFQLQTKSPKTSTLSHRRPPLSISVPQPTVSQSPAESDSGDIRHYRGVRRRPWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFEMRGSKAILNFPLEADNWSGSDPPAISGRKRERDSETEERQQVEIKVLKQEEYLPESDSTLAAASHVLGVSPLTPSNFRAGWEEREMEGIFHLPPLTPLSPHPWIAYSQLIV* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0390 277 MobiDBLite consensus disorder prediction 80 113 - -
Vvi16g0390 277 MobiDBLite consensus disorder prediction 29 67 - -
Vvi16g0390 277 Gene3D AP2/ERF domain 118 179 IPR036955 GO:0003700|GO:0006355
Vvi16g0390 277 PRINTS Ethylene responsive element binding protein signature 120 131 IPR001471 GO:0003700|GO:0006355
Vvi16g0390 277 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Vvi16g0390 277 SMART rav1_2 119 183 IPR001471 GO:0003700|GO:0006355
Vvi16g0390 277 PANTHER DNA-BINDING DOMAIN 51 207 IPR044808 GO:0003700|GO:0009873
Vvi16g0390 277 FunFam Ethylene-responsive transcription factor 2 118 179 - -
Vvi16g0390 277 Pfam AP2 domain 119 169 IPR001471 GO:0003700|GO:0006355
Vvi16g0390 277 ProSiteProfiles AP2/ERF domain profile. 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0390 277 MobiDBLite consensus disorder prediction 184 205 - -
Vvi16g0390 277 SUPERFAMILY DNA-binding domain 119 178 IPR016177 GO:0003677
Vvi16g0390 277 MobiDBLite consensus disorder prediction 191 205 - -
Vvi16g0390 277 CDD AP2 119 177 IPR001471 GO:0003700|GO:0006355
Vvi16g0390 277 MobiDBLite consensus disorder prediction 80 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0390 Vvi-Chr16 6676172 6677005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0390 86 277 AP2-EREBP Transcription Factor Family AT5G51190 49.239 2.17e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0390 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0390 K09286 - vvi:100242632 534.258