Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0385 ATGGCGGAAGAAGCTTCATCGCTTCACCTCATTCACCAACAACTTCTCTTCGACTTTGAATCATTCGAAAGCTTCTTTGAAACCAAATGCCACAAAACTTCCACATTAAGTCATCGGCGACTTCCACTCAGCATCTTAGTCCCTCAACCCACCGTTTCTCAGTCGCCGGTAGAGTCCGATTCAGGCGATATCATGCATTATAGAGGCGTGCGGAGACGATCATGGGGGAAATTCGCGGCGGAGATCCGAGACCCGAATCGGAGGGGATCGAGGGTATGGCTGGGGACATTCGAAACCGCCATTGAAGCCGCTAGAGCCTATGATCGAGCTGCTTTCAAGATGCGTGGTTCCAAAGCAATTCTCAATTTCCCTCTTGAAGCCGATAATTGGTCTGGTTCTGACTCACCAGCGATATCTGGCCGGAAAAGGGAGAGAGACAGTAAGACTGAAGAGAGACAACAAGTGGAGATTAAGGTTTTAAAGAAAGAGGAGCACTTGCCGGAATCTGACTGCAAAGTGGCGGTAGCCTGTAATGTTTTGGGGGTTAGTCCGTTGACTCCATCAAATTGGAGGGCCGTCTGGGAGGAGAGAGACATGGAGGGCATATTCCATCTCCCACCGTTAACGCCGTTATCACCCCATCCTTGGATAGCATATACTCAACTTATGGGTTTAATTAATACTAGCTAA 690 0.487 MAEEASSLHLIHQQLLFDFESFESFFETKCHKTSTLSHRRLPLSILVPQPTVSQSPVESDSGDIMHYRGVRRRSWGKFAAEIRDPNRRGSRVWLGTFETAIEAARAYDRAAFKMRGSKAILNFPLEADNWSGSDSPAISGRKRERDSKTEERQQVEIKVLKKEEHLPESDCKVAVACNVLGVSPLTPSNWRAVWEERDMEGIFHLPPLTPLSPHPWIAYTQLMGLINTS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0385 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Vvi16g0385 229 PANTHER DNA-BINDING DOMAIN 49 150 IPR044808 GO:0003700|GO:0009873
Vvi16g0385 229 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Vvi16g0385 229 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Vvi16g0385 229 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Vvi16g0385 229 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Vvi16g0385 229 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Vvi16g0385 229 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Vvi16g0385 229 FunFam Ethylene-responsive transcription factor 2 65 126 - -
Vvi16g0385 229 Gene3D AP2/ERF domain 65 126 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0385 Vvi-Chr16 6635936 6636951 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0385 6 223 AP2-EREBP Transcription Factor Family AT5G51190 49.778 1.45e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0385 AP2 5.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0385 K09286 - vvi:100247763 393.66