Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0384 ATGAAGGAAACCACCATGGGTGAGATTGGTCTTCCTCCCATTCGTGAACATTCAGAGGCCTCTATCTGTTTTCCGGTGAGTACCTCCGGTGAAAAGCCGGTGTATGGCCGGAGCTCCAGCTTCAACAGTCTGATGCCGTTCTTGACGGAGAACTGGGGAGACTTGCCGTTGAAGGTTGACGATTCGGAGGATATGGTGCTGTACGGTGTCCTCCGAGACGCCGTGAGTGTCGGATGGACACCGTTCGGCCTGCCACCCCCGCCGGAGGTGAAGGAGGAGCCTAGGGAAGAAGTAGCGGCGCCGGCGATGCCCGAGGTGAGGGCTGCGCCGTCGAGAGGGAGGCATTACAGAGGAGTCCGGCAACGGCCGTGGGGGAAGTTCGCTGCGGAGATTAGGGATCCGGCGAAGAACGGCGCGAGAGTGTGGCTGGGGACCTATGAGACGGCTGAGGAAGCCGCGGTGGCTTATGACCGAGCAGCTTATCGGATGCGCGGCTCGCGAGCGTTGCTCAATTTTCCGCACAGGGTCGGCTCGGGTGAGCCGGATCCGGTGAGAATCACGGCAAAGCGCCGCTCGCCAGAGCCGGAGCCGTCGCCAGAAAGTGGCTCGCCGAAGCGGCTAAAGAATGGTTTGGCAGCTGAAGTGGAGCGAAGATCCAATGTGTTTCAGGTGGGGCATCAGATGGGTGCGTTGCCAGTTGGCGAGCAATTATTGGTCGTGTAA 723 0.6017 MKETTMGEIGLPPIREHSEASICFPVSTSGEKPVYGRSSSFNSLMPFLTENWGDLPLKVDDSEDMVLYGVLRDAVSVGWTPFGLPPPPEVKEEPREEVAAPAMPEVRAAPSRGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAAVAYDRAAYRMRGSRALLNFPHRVGSGEPDPVRITAKRRSPEPEPSPESGSPKRLKNGLAAEVERRSNVFQVGHQMGALPVGEQLLVV* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0384 240 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Vvi16g0384 240 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Vvi16g0384 240 FunFam Ethylene-responsive transcription factor 2 114 174 - -
Vvi16g0384 240 PANTHER DNA-BINDING DOMAIN 104 201 IPR044808 GO:0003700|GO:0009873
Vvi16g0384 240 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Vvi16g0384 240 Gene3D AP2/ERF domain 114 175 IPR036955 GO:0003700|GO:0006355
Vvi16g0384 240 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Vvi16g0384 240 SUPERFAMILY DNA-binding domain 115 175 IPR016177 GO:0003677
Vvi16g0384 240 CDD AP2 115 174 IPR001471 GO:0003700|GO:0006355
Vvi16g0384 240 MobiDBLite consensus disorder prediction 174 212 - -
Vvi16g0384 240 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0384 Vvi-Chr16 6601192 6601914 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0384 13 240 AP2-EREBP Transcription Factor Family AT4G17500 50.988 1.41e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vvi16g0384 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0384 K09286 K13432 vvi:100244163 425.246