Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0382 ATGGTTAGTTTTAACTCGAGGAGAGTTGTGTTCCTGAAACTCCCCTTTATAAATACGCACACCCTCTGCACTCCCGGTGCAAATTCTTTCCATTATCATTGTCCAAAGATTTTCCAAACCTCTGCACTGATGAATATCTCGAAAATGTGGAAACACCTGAACCTGAGCGCCAGTTTCTACGATTTCTCGGATTACCAGCTTGAGGAGTTGGGCCTCAACCCAACCCCATTCCAGTACCTCCCCGATCGCACCCAGCATCCGATTTACAGCTCGGACGAATTCCGAATGTACGGGTTTAAAATAAAAAAGTGCTCAAAGACCCGCAGCCATGACTGGACGGAGTGCCCATTCGCGCATCGAGGCGAAAAGGCGAAGCGTCGGGATCCGCGCAAAGTGAACTATGCGGCCATTTCATGCCCCGACTTCCGAAACGGCGCCGAGTGCCCTAGGGGTGAGGCCTGCGAGTTCGCGCACGGCGTTTTCGAGTACTGGCTGCATCCGGCCAAGTACCGCACACGTGCATGCAATGCCGGGACATTTTGTCAACGTAAGGTGTGCTTCTTCGCACACACGCCGGAGCAGCTCCGTGCGGAGACCAAGTACAAGTGCCATTTCACGTACCGGGTGCGGAGGTCCAACGGCGGAGAGGACAAGCGAAGTGGATCGGACGCTGACGAAAGATCGGTTTTTGTTGACTCAGAGGCAGCAGCCAAGAGTGAGAGCCCTGTGGATGGGTACGCTGAATTTTTGAGGGCTCTGAGGGCGCTAAAGATCCCGCACGACGATGACAAGAGTTTCGGATACGACACTGTTTCGGACCCGGATTGGAAGTTCGATTGGATTTCGGACTTGGTGGAGTAA 861 0.5331 MVSFNSRRVVFLKLPFINTHTLCTPGANSFHYHCPKIFQTSALMNISKMWKHLNLSASFYDFSDYQLEELGLNPTPFQYLPDRTQHPIYSSDEFRMYGFKIKKCSKTRSHDWTECPFAHRGEKAKRRDPRKVNYAAISCPDFRNGAECPRGEACEFAHGVFEYWLHPAKYRTRACNAGTFCQRKVCFFAHTPEQLRAETKYKCHFTYRVRRSNGGEDKRSGSDADERSVFVDSEAAAKSESPVDGYAEFLRALRALKIPHDDDKSFGYDTVSDPDWKFDWISDLVE* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0382 286 SMART c3hfinal6 133 160 IPR000571 GO:0046872
Vvi16g0382 286 SMART c3hfinal6 169 192 IPR000571 GO:0046872
Vvi16g0382 286 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 159 IPR000571 GO:0046872
Vvi16g0382 286 SUPERFAMILY CCCH zinc finger 133 164 IPR036855 GO:0046872
Vvi16g0382 286 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Vvi16g0382 286 Gene3D - 136 198 - -
Vvi16g0382 286 PANTHER UNKEMPT FAMILY MEMBER 69 220 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0382 Vvi-Chr16 6538759 6539958 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0382 58 286 C2H2 Transcription Factor Family AT5G07500 49.200 6.33e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi16g0382 zf-CCCH 5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0382 - - vvi:100254431 523.857