Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0369 ATGATTTCAGTGGAGAGGATTCTTCAATTCACCAAAATACCAAGTGAAGCTCCATTAGTGATTGAAAACTATAGGCCAAGCCTTGAATGGCCAAGTAATGGAAGAATAGACCTTGACAACCTCCATGTCCAATATACCCCTACTCTCCCAATGGTTCTCAGAAGTATAACTTGGGCCTTCCCAGGAGAAAAGAAAATTGGTTTTGTGGACATAACAGGAAGTGGAAAGTCAACATTAATCCAAGCTCTTTTCCTAGTCGTTGAATCCTCAAAAGGCCAGATACTCACTAATGGGGTAGATATCAGTAAAATGGGTTTGAAGGATTTGAGGTCTCGCTTGAGCATAATTTCTCAAGACCCAACATTGTTTCAAGGAACCATGAGAACTAATTTGGATCCTCTAGGAGAGCATTCAGATCAAGAAATCGAGGAGGTGTTGAACATGTGTTGTCTTGCAAAGATTGTAGGACAGGATAAAGGGCTTCTTAATGCATGA 495 0.4061 MISVERILQFTKIPSEAPLVIENYRPSLEWPSNGRIDLDNLHVQYTPTLPMVLRSITWAFPGEKKIGFVDITGSGKSTLIQALFLVVESSKGQILTNGVDISKMGLKDLRSRLSIISQDPTLFQGTMRTNLDPLGEHSDQEIEEVLNMCCLAKIVGQDKGLLNA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0369 164 Gene3D - 19 164 IPR027417 -
Vvi16g0369 164 FunFam ATP-dependent bile acid permease, putative 21 163 - -
Vvi16g0369 164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 156 IPR027417 -
Vvi16g0369 164 Pfam ABC transporter 54 149 IPR003439 GO:0005524
Vvi16g0369 164 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0369 Vvi-Chr16 6063314 6063808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0369 12 149 Calmodulin-binding Proteins AT2G36910 29.577 1.26e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0369 - - vri:117918295 279.256