Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0364 ATGCACCCCCAATTAGAGCGGAATTTGCTCCAATTGGATCCTTGGTGCCAGACTTTTGGAAATAAAGCTGGTCGAGGCAAAAGTGTGTTGAGAAGTATTGGGAAGGAAGTTGAAATATGCAGCAAGGACCAGAGTTCCATGGACCATCAGACAATTGTTAACAACAGTAGAGTGCAGGGGGCTCTAAATCTGTTCCAAGAGTTATTGGAAAAGCTCACACATGAAGCAAGTCTAACAATGAAAAAAGTTATTATTAGTAAGCTTCATGTGGAGGCAGCAATGACTCTCAAGAGGCAACAAAAGTGGGTTAACACAACCAAACGACTAGGACATGTTCCTGGTATTGAAGTTGGTGATACGTTTCGTTATAGGGTTGAGTTGTGTATTATTGGCCTTCATAGTCATTTTCAGAATGGCATAGATTACATGGAGAAAGATGGAAAAATATTGGCCATTAGTATTGTTGATTCTGGCCGTTATGCCAATGACAAGGAATCTTCTGACATCTTAATATATTCGGGTCAAGGTGGAAACCCAATGGTTGGACATAAGCAGGCTGAAGACCAGAAACTGGAACGAGGAAACCTTGCATTGAAGAATAGCATGGATGCTAAAACTCCTGTAAGAGTTACTCGGGGTTTTCAAGCTACAAAGGTGACTTCCCAGGGATACACTTATGATGGTCTGTATTTTGTGGACAAGTATTGGCAGGAAATAGGTCAATTTGGTACACTCATTTTTAAATATCAATTGAAAAGAATTAGAGGACAACCAAAATGTAATCTAAGGGAATTCAATGAGTCAAAAAAATCAAAAGTACGCTGGAAAATTACGTTCAATGATATTTCACGTGGCAGAGAATTGAACAAGCCGAAAAAATCAAAAGTACGAATGAAAACTATTTTAAATGATATTTCTCAGGGGAAGGAGGAGAGGCCCATCCGTGTGGTGAACACAATTGATGATGAGAAACCTCAACCCTTTAGTTACATTGCCCGAATGGTATATTTAGAGAGTTCCAACTGGTCCATTCCAAGTGGTTGTGATTGCACTGATGGATGCTCGGATTCTGTGAAATGTGCTTGTGTCCTCAAGAATGGAGGAGAGATTCCATTTAACTGCAGTGGGGCTATTATTGAAGCAAAGCCTTGGATTTATGAGTGTGGTCCTTTGTGCAAGTGCCCTCCTTCTTGTAACAATAGAGTCAGCCAAAATGGTATCAGATTCCCATTGGAGGTTTTCAAGACCAAATCAACTGGATGGGGTGTTAGGTCTCGAAATTATATTCCATCTGGAAGTTTTATATGTGAGTATGCAGGCGAGCTAATCCAAGACAAGGAAGCTGAACAAAGGGTTGGTAATGATGAGTATTTGTTTGATTTAGGTGGTGGAATGAATTGTCTCGAATCGCAACTAAATTCTTTTGAGGCCATGGATGATTTACAATCAAGTTCTTATAAAGCCAAGGACTATGGGGCATTTGCCATTGATGCAGCCAAGTTTGCAAATGTGGGAAGATTTTTCAACCATAGTTGTTCGCCTAACCTTTATGCCCAAAATGTCCTTTATGATCATGATGACAAGAGGATGCCTCATATAATGCTATTTGCTACCAAGAACATACCTCCCATGCGAGAATTAACGTATGATTACAATTATATGGTGGGTCAGGTTCGCGATATTAATGGGAAAATCAAGAAGAAAAGGTGTTATTGTGGTTCTCGAGAGTGCACGGGCAGGATGTACTAA 1749 0.4014 MHPQLERNLLQLDPWCQTFGNKAGRGKSVLRSIGKEVEICSKDQSSMDHQTIVNNSRVQGALNLFQELLEKLTHEASLTMKKVIISKLHVEAAMTLKRQQKWVNTTKRLGHVPGIEVGDTFRYRVELCIIGLHSHFQNGIDYMEKDGKILAISIVDSGRYANDKESSDILIYSGQGGNPMVGHKQAEDQKLERGNLALKNSMDAKTPVRVTRGFQATKVTSQGYTYDGLYFVDKYWQEIGQFGTLIFKYQLKRIRGQPKCNLREFNESKKSKVRWKITFNDISRGRELNKPKKSKVRMKTILNDISQGKEERPIRVVNTIDDEKPQPFSYIARMVYLESSNWSIPSGCDCTDGCSDSVKCACVLKNGGEIPFNCSGAIIEAKPWIYECGPLCKCPPSCNNRVSQNGIRFPLEVFKTKSTGWGVRSRNYIPSGSFICEYAGELIQDKEAEQRVGNDEYLFDLGGGMNCLESQLNSFEAMDDLQSSSYKAKDYGAFAIDAAKFANVGRFFNHSCSPNLYAQNVLYDHDDKRMPHIMLFATKNIPPMRELTYDYNYMVGQVRDINGKIKKKRCYCGSRECTGRMY* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0364 582 ProSiteProfiles Post-SET domain profile. 566 582 IPR003616 -
Vvi16g0364 582 ProSiteProfiles SET domain profile. 409 552 IPR001214 GO:0005515
Vvi16g0364 582 SMART G9a_1 105 257 IPR003105 -
Vvi16g0364 582 Pfam Pre-SET motif 305 401 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi16g0364 582 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 47 576 - -
Vvi16g0364 582 ProSiteProfiles YDG domain profile. 110 253 IPR003105 -
Vvi16g0364 582 SUPERFAMILY SET domain 293 553 IPR046341 -
Vvi16g0364 582 SUPERFAMILY PUA domain-like 92 262 IPR015947 -
Vvi16g0364 582 Pfam SAD/SRA domain 109 257 IPR003105 -
Vvi16g0364 582 Gene3D SET domain 293 582 IPR046341 -
Vvi16g0364 582 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 582 IPR025794 GO:0016571
Vvi16g0364 582 Gene3D - 91 281 IPR036987 -
Vvi16g0364 582 SMART preset_2 302 393 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi16g0364 582 Pfam SET domain 420 552 IPR001214 GO:0005515
Vvi16g0364 582 ProSiteProfiles Pre-SET domain profile. 346 406 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi16g0364 582 SMART set_7 409 558 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0364 Vvi-Chr16 5892261 5894009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0364 107 582 EF-hand Containing Proteins AT5G13960 39.800 7.39e-116 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi16g0364 SAD_SRA 8.4e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0364 K11420 - vvi:100244174 1203.35