Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0349 ATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCAGGGAATGACAAAGATAAATTCAAGTTCTTTTTCAAGGCTACACTGCTTCAGCAGGTCAATGATCTACTGGTTAATATTGGGACTCGTTTAGATTCTGCAAATACACTGGTAGAGGAACTGGAAAAATCAATAGAACCAATTCTGAAGGAACTTAATGAGTTGCAAGTGAAAATTAGGAACATGGAGCATGTAGAAGAAATTTCTCAACAAGTACAGCAGTTGAAAAAGAAACTTGCCTGGTCATGGGTATATGATGTGGACCGACAACTCCAGGAACAAAGTGCAAAAATTGAAAAGCTTAAAGATCGGATACCGACTTGCCAAGCTAGGATTGATCGACAACTTGGTAAAATGGAGGAGTTGAGGGAGTGCTTGACCAAGAAGAAAACTCAAATTGCATGTATGATGGAAAAGACAACAGAAGTGAGGAGAATGAAGGAGGACTTGCAGCAGAGGCTTTCCTTGGCCACAAAAGAGAGGCTTGAGCTAGAAGAAGAACATTGCCGGAAAACTAACAAAATTCAGAAGATGGTGAATCTTGTTAGGCGGCTTGATCAACAAGTTCATGAGGTTCATGAGCAAGATCTAAAAAATACTCAGGCTGAAGAATCTGAAATAAAGGAAATGCTGAAGGGACTCCAAGATGAGCTTGATACAACAAATTTGATACTATCAAGGTTGAAGGAAGAAGAAAGTGCCTTATCAGCAAGCCTATCCATCAAAATGGATGAAATCAGAAAGATTTCGGATGAGATTGACGATTATGAAAGAAAGCATCGTGAAAACTATTCTTACATCTGCGAACTTCAGCAACACCAAACCAACAAGGTTACAGCTTTTGGAGGGGATAGGGTGATCCAACTTTTACGTGCAATTGAGAGACATCATCAAAGATTCAAAAGGCCACCCATTGGTCCAATTGGCGCCCATTTGACTTTAGTCAATGGTGACATATGGGCTATTGCTGTTGAAATTGCCATTGGAAAGATGCTTAATGCTTTCATTGTGACGGATCATAAAGATTCCCTTCTTTTGAGAGGATGTGCTAGAGAAGCAAACTATAACCACCTTCAGATAATCATATACGACTTTTCAAGGCCAAGATTGAATATTCCATATCACATGCTTCCTCAGACACAGCACCCAACTCTTATTTCTGCTTTGCATTCAGACAATCCTACTGTAATGAATGTCTTGGTTGATATGGGCAATGCTGAGAGACAAGTGCTTGTTAGAGACTATGAAGTTGGAAAAACAGTTGCTTTTGACCAAAGAATTCCGAACTTGAAGGAAGTTTACACATCAGATGGATATAGAATGTTTTCTCGTGGTTCAGTCCAGACCATTCTTCCTCCAAATAAGAAGGCTAGAACTGGCCGCCTTTGTAGTTCTTTCGACAGTCAGATCAAGGATCTTGAAAGATATGCATTAGACATTCAAGAACATGGTCAGGAAGTAAAAAGAAAGAAAAGGAATGCAGAGGAAGAACTTCAGGATCTTCAAGATAAACTACAGAGTATAAAGAGGAGGCGTCTTAATGCTGAGCGGGATGTGATGTCAAAGAAACTAAGATTGCAAGATGTGAAGAATTCATATGTTGCTGAATCCAATCCAGCACCTGCATCTTCTGTTGATGAGCTTCATCATGAAATCTCAAAAGTACAAGCTGAGATACGAGAAAAGGAAATCCTGTTAGAAGATTTCCAATTGAGAATGAGCAAAGCAGATGCAAAGGCTAATGATCTGAAATTATCCTTTGAGAATTTATGTGAATCAGCGAAAGTAGAAATTGATGCCTATGAGGCAGCAGAGAATGAACTAGTAGTGATTGAACAAGAATTGTGTTCTGCTGAAACGGAGAAAACCCATTATGAAGGGATAATGAATAACAAGGTGCTTCCTGACATAAAAGAGGCAGAGACACAGTATCAGGAGCTTGAACACAATCGTAAGGAGAGTTGCAGGAAGGCTTCTATTATTTGTCCTGAAAGTGAGATTGAAGCTTTGGGAGGCTGCAAGAGCACCCCAGAGCAACTGAGTGCCCAATTAAATAGGCTGAATCAGAGACTTCAAAGTGAAAGCCAGAGATATGCTGAACCTATTGAGGATCTCAGAATGATTTATGACAAAAAAGAGCGCAGAATTTTGAGAAAACAGCAAACTTATGAAGCTTTTAGAGAGAAATTGAATGCATGCAAGGAAGCCTTAGACCTGCGATGGAGCAAGTTTCAGAGGAATGCCACTCTTCTAAAGCGCCAGTTGACTTGGCAATTTAATGCTCACTTGAGAAAGAAAGGGATCAGTGGGCACATTAAAGTTAGTTATGAAGAGAAAACCCTATCAGTGGAGGTAAAGATGCCTCAAGATGCATCAAACAACATTGTTCGTGATACTCGAGGGCTTTCAGGTGGGGAACGCTCTTTCTCGACATTATGCTTTGCATTGGCTCTTCATGAGATGACAGAATCCCCATTCAGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTTAGCCGGAAGATCAGCTTGGACACCCTTGTGAATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACTCCTCATGATATCAGTATGGTTAAACAAGGGGAGAGGATAAAGAAGCAGCAAATGGCAGCCCCTCGTTCTTGA 2694 0.4024 MSQDKSREFLHSGNDKDKFKFFFKATLLQQVNDLLVNIGTRLDSANTLVEELEKSIEPILKELNELQVKIRNMEHVEEISQQVQQLKKKLAWSWVYDVDRQLQEQSAKIEKLKDRIPTCQARIDRQLGKMEELRECLTKKKTQIACMMEKTTEVRRMKEDLQQRLSLATKERLELEEEHCRKTNKIQKMVNLVRRLDQQVHEVHEQDLKNTQAEESEIKEMLKGLQDELDTTNLILSRLKEEESALSASLSIKMDEIRKISDEIDDYERKHRENYSYICELQQHQTNKVTAFGGDRVIQLLRAIERHHQRFKRPPIGPIGAHLTLVNGDIWAIAVEIAIGKMLNAFIVTDHKDSLLLRGCAREANYNHLQIIIYDFSRPRLNIPYHMLPQTQHPTLISALHSDNPTVMNVLVDMGNAERQVLVRDYEVGKTVAFDQRIPNLKEVYTSDGYRMFSRGSVQTILPPNKKARTGRLCSSFDSQIKDLERYALDIQEHGQEVKRKKRNAEEELQDLQDKLQSIKRRRLNAERDVMSKKLRLQDVKNSYVAESNPAPASSVDELHHEISKVQAEIREKEILLEDFQLRMSKADAKANDLKLSFENLCESAKVEIDAYEAAENELVVIEQELCSAETEKTHYEGIMNNKVLPDIKEAETQYQELEHNRKESCRKASIICPESEIEALGGCKSTPEQLSAQLNRLNQRLQSESQRYAEPIEDLRMIYDKKERRILRKQQTYEAFREKLNACKEALDLRWSKFQRNATLLKRQLTWQFNAHLRKKGISGHIKVSYEEKTLSVEVKMPQDASNNIVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVNFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0349 897 Coils Coil 250 270 - -
Vvi16g0349 897 Coils Coil 648 668 - -
Vvi16g0349 897 Coils Coil 484 529 - -
Vvi16g0349 897 Coils Coil 158 178 - -
Vvi16g0349 897 Pfam RecF/RecN/SMC N terminal domain 121 889 IPR003395 -
Vvi16g0349 897 Coils Coil 49 69 - -
Vvi16g0349 897 Coils Coil 556 583 - -
Vvi16g0349 897 Coils Coil 720 740 - -
Vvi16g0349 897 Coils Coil 95 122 - -
Vvi16g0349 897 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 1 896 - -
Vvi16g0349 897 SUPERFAMILY Smc hinge domain 255 456 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vvi16g0349 897 Coils Coil 605 625 - -
Vvi16g0349 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 887 IPR027417 -
Vvi16g0349 897 Coils Coil 208 242 - -
Vvi16g0349 897 Gene3D - 585 892 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0349 Vvi-Chr16 5567547 5636667 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0349 1 897 Structural Maintenance of Chromosomes family AT5G61460 64.031 0.0 1115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0349 K22804 - vvi:100249449 1747.64