LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0334	ATGACTCTCAAGAGGCAACAAAAGTGGGTTAACACAACTAAGCGACTAGGTCATGTTTCTGGTATTGAAGTTGGTGATACATTTCATTATAGGGTTGAATTGGCTATTATTGGCCTTCATAGTCATTTTCAGAATGGTATAGATTACATGGAGAAGGATGGAAAAGTATTGGCCATTAGTGTTGTTGATTCTGGCCGTTATGCCAATGACAAAGAATCCTCTGATGTCTTGATATATTTGGGTCAAGGTGGAAATCCAATGGTTGGATATAATAAGCAGCCTGAAGACCAGAAACTTGAACGAGGAAACCTTGCACTGAAGAATAGCATGGATGCTAAAACTCCTGTAAGGGTTACCCGAGGTTTTCAAGCTATGAAAGTGACTTCCAACGGCTACACTTATGATGGTCTGTATTTTGTGGACAAGTATTGGCAGGAAAGAGGTCAATTTGGTAAACTTGTTTTTAAATTCCAACTGAAAAGAATTACAGGAGAACCAAAGTTTGATCAAAGAGAATTGAATCAGTCAAAAGATTCAGAAGTACGCTGGAAAACTATTTTCAATGATATTTCTCTTGGCAGAAAATTGAAGAAGTCAAAAAAATCAAAAGTATGCAGGAAAAATATCTTAAACGATATTTCTTTGGGGAAAGAGGAGAGGTCCATCCATGTGGTGAACACAATTGATTATGAGAAACCTCAACCCTTCACTTACATTGCCCGCATGGCATATTTAGAGGGTTCTAAGTGGTCCATTCCAAGTGGTTGTGATTGCACTGACGGATGCTCAGATTCTGTGAAATGTGCTTGTGTCCTCAAGAATGGAGGAGAGATCCCATTTAACTGCCATGGGGCTATTATTGAGACAAAGCCCTGGGTTTATGAGTGTGGTCCTTTGTGCAAGTGCCCTCCTTCTTGTAACAATAGAGTCAGCCAAAATGGTATCAGATTCTCATTGGAGGTTTTCAAGACCAAATCAACAGGATGGGGTGTTAGGTCTCGAAATTATATTTCATCTGGAAGTTTTATATGCGAGTATGCAGGGGAGCTAATTCAAGACAAGGAAGCCAAACGAAGGACTGCTAACGATGAGTATTTGTTTGATTTAGATAATGGGGCCTTTGCCATTGATGCAGCCAAGTTTGGGAATGTGGGAAGATATATCAACCATAGTTGTTCACCCAACCTTTATGCCCAAAAAGTCCTTTATGATCATGACGACAAGAGACTGCCTCATATAATGCTATTTGCTACCAAGAACATACCACCCATGCGAGAATTAACATATCATTACAATTATATGGTGGGTCAGGTTCTTGATATTAATGGCCAAATCAAGACAAAAAGGTGTTACTGTGGTTCTCAAGAGTGCAAAGGCAGGATGTGCTGA	1389	0.3967	MTLKRQQKWVNTTKRLGHVSGIEVGDTFHYRVELAIIGLHSHFQNGIDYMEKDGKVLAISVVDSGRYANDKESSDVLIYLGQGGNPMVGYNKQPEDQKLERGNLALKNSMDAKTPVRVTRGFQAMKVTSNGYTYDGLYFVDKYWQERGQFGKLVFKFQLKRITGEPKFDQRELNQSKDSEVRWKTIFNDISLGRKLKKSKKSKVCRKNILNDISLGKEERSIHVVNTIDYEKPQPFTYIARMAYLEGSKWSIPSGCDCTDGCSDSVKCACVLKNGGEIPFNCHGAIIETKPWVYECGPLCKCPPSCNNRVSQNGIRFSLEVFKTKSTGWGVRSRNYISSGSFICEYAGELIQDKEAKRRTANDEYLFDLDNGAFAIDAAKFGNVGRYINHSCSPNLYAQKVLYDHDDKRLPHIMLFATKNIPPMRELTYHYNYMVGQVLDINGQIKTKRCYCGSQECKGRMC*	463

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0334	462	SMART	preset_2	210	301	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Vvi16g0334	462	ProSiteProfiles	Pre-SET domain profile.	254	314	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Vvi16g0334	462	SUPERFAMILY	SET domain	205	433	IPR046341	-
	Vvi16g0334	462	SMART	G9a_1	12	165	IPR003105	-
	Vvi16g0334	462	Gene3D	SET domain	202	461	IPR046341	-
	Vvi16g0334	462	Pfam	SET domain	328	432	IPR001214	GO:0005515
	Vvi16g0334	462	ProSiteProfiles	Post-SET domain profile.	446	462	IPR003616	-
	Vvi16g0334	462	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	4	456	-	-
	Vvi16g0334	462	Pfam	SAD/SRA domain	16	164	IPR003105	-
	Vvi16g0334	462	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	3	461	IPR025794	GO:0016571
	Vvi16g0334	462	Gene3D	-	1	185	IPR036987	-
	Vvi16g0334	462	ProSiteProfiles	YDG domain profile.	17	161	IPR003105	-
	Vvi16g0334	462	SUPERFAMILY	PUA domain-like	3	168	IPR015947	-
	Vvi16g0334	462	ProSiteProfiles	SET domain profile.	317	432	IPR001214	GO:0005515
	Vvi16g0334	462	SMART	set_7	317	438	IPR001214	GO:0005515
	Vvi16g0334	462	Pfam	Pre-SET motif	213	309	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0334	Vvi-Chr16	5345035	5346423	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0334	14	461	EF-hand Containing Proteins	AT5G13960	38.477	2.19e-106	323

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Vvi16g0334		SAD_SRA	4.2e-49	CL0178

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0334	K11420		-	vvi:100259566	957.207