Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0323 ATGCCTACCAGAACAACGCAAATCGCTTTTCCGGCCACCGCCGTGGTTGCGCTCGTCCTTCTCCTCCTCCCGCTAATTATACTCGCCGATGACTTACAAATCCCGAACGATAAAACTCAACTAACTGCATGGTTCGGCAGAACCATCAAGAACTATAAGCTCCGGAGGGCGACGCTTGATCCAGAGCTGGTGAAGGCGGAGGACAACTTAAAAATCATTAAGGTGAGTAAAAGTGGCGGAGGAGACTTCAAGACGGTGACGGATGCCGTCAACAGTGTTCCGGAGGGTAACGCTGGGCGCGTAATTATATGGATTGGAGGCGGAGTATATGAAGAAAAAATCAAGATTGATAGGACTAAGCCCTTCGTCACATTCTACGGATCACCCGACCACATGCCCATGCTGTCATTCGACGGGACGGCGGCCAAGTACGGGACGGTGGACAGCGCCAGCCTGATAGTGGAATCTCATTACTTCATGATGGTGAACATAATTGTCATTAACTCGTCCCCGAAGCCGGACGGGAAACGGAAGGGGGCGCAGGCGGTGGCGCTGAGGATTTCAGGTGATAAGGCCGCGTTTTATAACAGCAAGCTGATCGGTTTTCAGGACACCCTATGTGATGATAGGAACAGACATTTTTTCAAGAAGTGCTACATTGAAGGCACTGTCGACTTCATATTTGGGAGCGGCAAGTCCATTTTTTTGAGCACAGAGGTACATGCCATGGGAGACGGGGCGATGCCTACGGTGATAACCGCGCACGCAAGGAACTTGGAATCAGAGGACACAGGATACTCATTCGTTCACTGCACGATATCTGGTACTGGGAGCACCACATTCTTAGGGCGGGCATGGATGGATAGACCCAAGGTGGTGTTTTCCCACACCTACATGAGCTCTGTTGTGAACCCTCTTGGCTGGTCCAATAACCTCCACCCTGATCGAGACTCAATGGTTTTCTTTGGAGAATACAACTGCTTGGGACCAGGAGCAAACATGTCGAGACGAGCTAAATTCACGAAGAAGTTGGATTTCAATGGAGCCAAGCCCTACATCAGCCTCAACTACATTAGGGCTTCATCATGGTTGCTTCCTCCGCCAAACCTATCGGCTCATCTCCTCATTTTCCGCGTAGACTTTCATGACCAGGAAAGTGGGTGCCAACAATGCCCCCAATTTCCCATTGTCTGTATGTGA 1200 0.5042 MPTRTTQIAFPATAVVALVLLLLPLIILADDLQIPNDKTQLTAWFGRTIKNYKLRRATLDPELVKAEDNLKIIKVSKSGGGDFKTVTDAVNSVPEGNAGRVIIWIGGGVYEEKIKIDRTKPFVTFYGSPDHMPMLSFDGTAAKYGTVDSASLIVESHYFMMVNIIVINSSPKPDGKRKGAQAVALRISGDKAAFYNSKLIGFQDTLCDDRNRHFFKKCYIEGTVDFIFGSGKSIFLSTEVHAMGDGAMPTVITAHARNLESEDTGYSFVHCTISGTGSTTFLGRAWMDRPKVVFSHTYMSSVVNPLGWSNNLHPDRDSMVFFGEYNCLGPGANMSRRAKFTKKLDFNGAKPYISLNYIRASSWLLPPPNLSAHLLIFRVDFHDQESGCQQCPQFPIVCM* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0323 399 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Vvi16g0323 399 SUPERFAMILY Pectin lyase-like 72 364 IPR011050 -
Vvi16g0323 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 65 364 - -
Vvi16g0323 399 FunFam Pectinesterase 68 366 - -
Vvi16g0323 399 Gene3D - 70 367 IPR012334 -
Vvi16g0323 399 Pfam Pectinesterase 73 358 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0323 Vvi-Chr16 5102506 5106639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0323 15 370 Carbohydrate Esterase AT1G69940 54.062 9.15e-141 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0323 K01051 - vvi:100264859 733.791