Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0322 ATGGCTACGAAAATGACACACACTGCTTTTCCAGCCGCAGCCTCTATGGTGTTCTTCTTCCTCGTCCTCCCGTCGACTGTGCTTGCGGATGATCCCCAAATCCCTGACGATGCAATTCAACTAGCTTCATGGTTCAACGATGTCATCCAGAGCCATAACCTCCGGCGGACGACTCTTGATCCGGTCCTAGTGAAGGCGGAGGAGAGGGTAAAAATCATCAAGGTAAGTAAAGGTGGTGGAGGAAACTTCAATAAGGTGATGGCGGCGGTCGATAGTGTTCCAGCTGGTAACACTCAACGCGTAATTATATGGATTGGAGGTGGAGTATATGAAGAGAAAATCAAGATTGATAGGAGTAAACCATTTATAACATTCTATGGATCGCCGGACGACATGCCGATGCTGTCATTTGATGGGACGGCTGCCAAGTTCGGGACAGTGGACAGTGCCACGCTAATAGTGGAATCAGATTACTTCATGGCGGTTAACATAATAGTCATTAACTCGTCCCCGAGGCCGGAAGGGAGAAGGAACGGAGGGCAGGCGGTGGCAGTGAGGGTGTCGGGTGATAAGGCCGCGTTTTATAACTGCAAGCTGGTCGGTTTTCAGGACACCCTATGTGATGATAGAGGCAGGCATTTTTTCCATGGATGCTACATTGAAGGCACTGTGGACTTCATATTTGGAAGTGGCAAGTCTCTCTATTTGAGCACTGAGCTACATGCCAAGGGAGCTGGTGGCGAATTTTCAGTGATCACAGCGCAGGCGAGGAAACTTGAATCAGAGGACAATGGATACTCTTTCGTCCACTGCAGGGTGTCGGGTAGTGGCAGCAACACTTACTTAGGGCGGGCATGGATGAGTAGACCGAGGGTGGTGTTTTCATACACCAACATGAGCACTGTTGTCCACCCTTTAGGCTGGTCCGATAACTTCCACCCTGAACGCGACTCATTGGTTTTCTATGGAGAATACAAGTGTATGGGGCCAGGAGCAAACACATCCAAACGAGCAAAATTCGCGAAGATGCTAGACGATGATGGGGTGAGACCCTTCGTCACCCTCAACTACATTGAAGCTTCAAAATGGTTGCTTCCTCCGCCACGCCTTGTACCCCGCGGAAAGAGATACGAATTGGTATATAGCAAATGGATGATGACGAGGTACTCCGTGCAGAACAATATTCTTGTTTAA 1194 0.4916 MATKMTHTAFPAAASMVFFFLVLPSTVLADDPQIPDDAIQLASWFNDVIQSHNLRRTTLDPVLVKAEERVKIIKVSKGGGGNFNKVMAAVDSVPAGNTQRVIIWIGGGVYEEKIKIDRSKPFITFYGSPDDMPMLSFDGTAAKFGTVDSATLIVESDYFMAVNIIVINSSPRPEGRRNGGQAVAVRVSGDKAAFYNCKLVGFQDTLCDDRGRHFFHGCYIEGTVDFIFGSGKSLYLSTELHAKGAGGEFSVITAQARKLESEDNGYSFVHCRVSGSGSNTYLGRAWMSRPRVVFSYTNMSTVVHPLGWSDNFHPERDSLVFYGEYKCMGPGANTSKRAKFAKMLDDDGVRPFVTLNYIEASKWLLPPPRLVPRGKRYELVYSKWMMTRYSVQNNILV* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0322 397 ProSitePatterns Pectinesterase signature 2. 220 229 IPR033131 -
Vvi16g0322 397 Gene3D - 69 367 IPR012334 -
Vvi16g0322 397 Pfam Pectinesterase 74 359 IPR000070 GO:0030599|GO:0042545
Vvi16g0322 397 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 67 364 - -
Vvi16g0322 397 FunFam Pectinesterase 68 366 - -
Vvi16g0322 397 SUPERFAMILY Pectin lyase-like 72 364 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0322 Vvi-Chr16 5068577 5070069 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0322 16 370 Carbohydrate Esterase AT1G69940 54.930 2.89e-140 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0322 K01051 - vvi:100242572 803.897