Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0318 ATGGCTATGACAGTGATATCCATTGCTTTCTTCCTCCTCGTCCCCCTCTCATCATCGGCTGTACTTGCCGACAATGATAATGCACAAATCCCTAGCGATAAAAGTCAACTAGCTCCATGGTTCAGAAATAGCATCCAGAAGTACAAGCTCCGGAGGACGACGCTGGATCCAGCCCTAGTGGAGGCGGAGGACAGCGTAAAAATCATCAAGGTGAGTAAAAGCGGTGGAGGAAACTTCAATACGGTGATGGCGGCAGTCAATAGTGTTCCAGCCGGTAATACACAACGTGTAATTATATGGATTGGAGGCGGAGTATATGAAGAGAAAATCAAGATCGATAGGAATAAGCCCTTTATAACATTCTACGGATCACCAGAGGACATGCCAAAGCTGTCATTTGATGGGACGGCAGCCAAGTTCGGGACAGTGGACAGCGCGACGCTTATAGTGGAGTCGGATTACTTCATGGCGGTGAACATAATTGTCATTAACTCGTCCCCAAGACCAGACGGAAAAAGAAAGGGAGCCCAGGCGGTGGCACTGAGGGTGTCAGGCGATAAGGCCGCATTTTACAACTGCAGGCTGATCGGTTTTCAGGACACCCTATGTGATGATAGGGGCAGGCATTTTTTCCATGAATGCTACGTTGAAGGCACTGTGGACTACATATTTGGAAGTGGAAAATCTTTGTATTTGAGCACTGAGCTACATACCAAGGGAGACGGCGGATTTTCAGTGATCACAGCGCAGGCAAGGAACCTTGAATGGGAGGACAATGGATATTCATTCGTCCACTGCACCTTGTCAGGTACTGGCGGCAACACTTTCTTAGGGCGGGCATGGATGAGTAGACCGAGGGTGGTGTTTTCATACACCTTCATGAGTTCTGTTGTCAGTCCTTTAGGATGGTCCGATAACGACCAACCTGAACGTGACTCATTGGTTTTCTATGGAGAATACAAGTGTATGGGACCAGCGGCAGACACATCCAAACGACCCAAATTCAGCAAGGAACTAGACGATAATGGAGCCACACCCTTCATCACCCTCAACTACATTGATGCTTCAACGTGGTTGCTTCCTCCCCCAGGCCTTGTACTCCGTTGA 1107 0.4851 MAMTVISIAFFLLVPLSSSAVLADNDNAQIPSDKSQLAPWFRNSIQKYKLRRTTLDPALVEAEDSVKIIKVSKSGGGNFNTVMAAVNSVPAGNTQRVIIWIGGGVYEEKIKIDRNKPFITFYGSPEDMPKLSFDGTAAKFGTVDSATLIVESDYFMAVNIIVINSSPRPDGKRKGAQAVALRVSGDKAAFYNCRLIGFQDTLCDDRGRHFFHECYVEGTVDYIFGSGKSLYLSTELHTKGDGGFSVITAQARNLEWEDNGYSFVHCTLSGTGGNTFLGRAWMSRPRVVFSYTFMSSVVSPLGWSDNDQPERDSLVFYGEYKCMGPAADTSKRPKFSKELDDNGATPFITLNYIDASTWLLPPPGLVLR* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0318 368 Gene3D - 64 361 IPR012334 -
Vvi16g0318 368 SUPERFAMILY Pectin lyase-like 68 359 IPR011050 -
Vvi16g0318 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 359 - -
Vvi16g0318 368 Pfam Pectinesterase 69 354 IPR000070 GO:0030599|GO:0042545
Vvi16g0318 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Vvi16g0318 368 FunFam Pectinesterase 64 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0318 Vvi-Chr16 5021954 5023523 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0318 1 365 Carbohydrate Esterase AT1G69940 56.164 1.52e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0318 K01051 - vvi:100263101 739.184