Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0313 ATGGCTACAACCATGACTTCCATTGCTTTCTTCCTCCTCCTCCTCCTCCTCTCATTGTCGGCTGTACTTGCCGACAATGATAATGCACAAATCCCTAGCGATAAAAGTCAACTAGCTCCATGGTTCAGAAATAGCATCCAGAAGTACAAGCTCCGGAGGACGACGCTGGATCCAGCCCTAGTGGAGGCGGAGGACAGCGTAAAAATCATCAAGGTGAGTAAAAGCGGTGGAGGAAACTTCAATACGGTGATGGCGGCAGTCAATAGTGTTCCAGCTGGTAATACTCGGCGCGTGATTATATGGATTGGAGGCGGAGAATATGAAGAGAAAATCAAGATCGATAGGGATAAGCCCTTTATAACATTCTACGGATCACCGGAGGACATGCCAAAGCTGTCATTTGATGGGACGGCAGCCGAGTTCGGGACAGTGGACAGCGCGACGCTCATAGTGGAGTCGGATTACTTCATGGCGGTGAACATAATTGTCATTAACTCGTCCCCAAGGCCGGACGGGAAAAGGAAGGGAGCCCAGGCGGTGGCACTGAGGGTGTCAGGCGATAAGGCCGCGTTTTATAACTGCAGGCTGATCGGTTTTCAGGACACCCTATGTGATGATAGGGGCAGGCATTTTTTCCATGGATGCTACGTTGAAGGCACTGTGGACTACATATTTGGAAGTGGAAAGTCTCTGTATTTGAGCACTGAGCTACATACCAAGGGAGACGGCGGGTTTTCAGTGATCACAGCGCAGGCAAGGAACCTTGAATCGGAGGACAATGGATACTCATTCGTCCACTGCACCTTGTCAGGTACTGGCGGCAACACTTTCTTAGGGCGGGCATGGATGAGTAGACCGAAGGTGGTGTTTTCATACACCTTCATGAGCCCTGTTGTCAGTCCTTTAGGGTGGTCCAATAACATCCACCCTGAACGGGAATCATTGGTTTTCTATGGAGAATACAAGTGTATGGGACCAGGGGCAGACACATCTAAACGATCCAAATTCACCAAGGAACTAGACGATGATGGAGCCACACCCTTCATCACCCTCAACTACATTGATGCTTCAACATGGTTGCTGCCTCCCCCAGGTCTTGCACTCCGTTGA 1110 0.5 MATTMTSIAFFLLLLLLSLSAVLADNDNAQIPSDKSQLAPWFRNSIQKYKLRRTTLDPALVEAEDSVKIIKVSKSGGGNFNTVMAAVNSVPAGNTRRVIIWIGGGEYEEKIKIDRDKPFITFYGSPEDMPKLSFDGTAAEFGTVDSATLIVESDYFMAVNIIVINSSPRPDGKRKGAQAVALRVSGDKAAFYNCRLIGFQDTLCDDRGRHFFHGCYVEGTVDYIFGSGKSLYLSTELHTKGDGGFSVITAQARNLESEDNGYSFVHCTLSGTGGNTFLGRAWMSRPKVVFSYTFMSPVVSPLGWSNNIHPERESLVFYGEYKCMGPGADTSKRSKFTKELDDDGATPFITLNYIDASTWLLPPPGLALR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0313 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 360 - -
Vvi16g0313 369 Pfam Pectinesterase 70 355 IPR000070 GO:0030599|GO:0042545
Vvi16g0313 369 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Vvi16g0313 369 SUPERFAMILY Pectin lyase-like 69 360 IPR011050 -
Vvi16g0313 369 FunFam Pectinesterase 65 362 - -
Vvi16g0313 369 Gene3D - 65 362 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0313 Vvi-Chr16 4915538 4917051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0313 6 366 Carbohydrate Esterase AT1G69940 55.402 3.55e-148 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0313 K01051 - vvi:100266527 733.791