Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0240 ATGCTTGTAAAACGTTCCAGGCTCTGTGTTCCTTCCTATTTTCTTTGCTTCTTTGTTGTCGCCATGATGAAGCACTCCATCAGGCTTCGTGCTGAGAAGACTGGAAACCCGGTTTTCCTCAATCTCGTTCCTCTTCTCGTGGGTAATGTGGGTCTGATTTTCACAAAGGGTGATTTAAAGGAGGTCGACGAGGAGGTGGCCAAATACAAGGTTGGAGCTCCTGCCCGTGCTGGATTAGTTGCTCATATTGATGTCATTGTCCCACCTGGTAACACTGGACTCGACCTTGCCCACACCCGAGCCTCCATCAAACCCATCTCTCCAACCTTTTCCCAACCTCTCCATCAAGGTCACTCTCCATCACCGCCAGCCGTCTATGCTGTCAATAGCACCCCCCACTCATCTTCATGCCCATCTCTCACACATTCTTGA 432 0.5 MLVKRSRLCVPSYFLCFFVVAMMKHSIRLRAEKTGNPVFLNLVPLLVGNVGLIFTKGDLKEVDEEVAKYKVGAPARAGLVAHIDVIVPPGNTGLDLAHTRASIKPISPTFSQPLHQGHSPSPPAVYAVNSTPHSSSCPSLTHS* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0240 143 FunFam Uncharacterized protein 22 106 - -
Vvi16g0240 143 Gene3D - 20 106 IPR043141 -
Vvi16g0240 143 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 21 99 - -
Vvi16g0240 143 MobiDBLite consensus disorder prediction 108 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0240 Vvi-Chr16 3437096 3437527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0240 22 99 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 76.923 3.41e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0240 K02941 - vvi:100250067 126.331