Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0221 ATGGATTCTGGGAAAGAGAGCGATAGTGCGGCTGATACTCCCACCTCGCCAAAAAATGTGTACAAGGATCCAGATGATGGCCGACAACGGTTTCTCCTTGAGTTGGAATTTGTCCAATGTCTTGCCAATCCCACCTACATTCACTATTTGGCTCAAAATCGCTATTTTGAAGATGAAGCTTTCATTGGCTACTTGAAATACCTTCAATATTGGCAACAACCAGAGTACATAAAATTCATAATGTATCCACATTGCCTTTTTTTTCTTGAACTTCTTCAGAATGCAAACTTCCGCAATGCAATGGCTCATCCTGGAAGCAAGGAATTGGCACATAGGCAGCAATTTTTTTATTGGAAGAACTACAGGAATAACCGGTTGAAGCACATTCTTCCAAAGCCCCTTCCTGAACCTCTTGCTGGAACTCCAGCCCCTGGTCCACCTCCACAATCTGCACCACCTACAACAATTGCTGTTACTTCCGCTGGTTCTCCAGCCCTGTCTCCTATGCAGTATGGAATCCCTGCTGGATCTTCTCTTTCAAAGAATGATATGAGGAATAGTGCCATTGATCGAAGAAAGAGAAAGAAAGAAGGTTAA 597 0.4322 MDSGKESDSAADTPTSPKNVYKDPDDGRQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQQPEYIKFIMYPHCLFFLELLQNANFRNAMAHPGSKELAHRQQFFYWKNYRNNRLKHILPKPLPEPLAGTPAPGPPPQSAPPTTIAVTSAGSPALSPMQYGIPAGSSLSKNDMRNSAIDRRKRKKEG* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0221 198 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 7 195 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vvi16g0221 198 MobiDBLite consensus disorder prediction 135 153 - -
Vvi16g0221 198 FunFam Mediator of RNA polymerase II transcription subunit 31 17 118 - -
Vvi16g0221 198 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 16 118 IPR038089 -
Vvi16g0221 198 MobiDBLite consensus disorder prediction 132 198 - -
Vvi16g0221 198 Pfam SOH1 29 121 IPR008831 GO:0003712|GO:0006355|GO:0016592
Vvi16g0221 198 MobiDBLite consensus disorder prediction 1 24 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Vvi16g0221 Med31 1.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0221 K15153 - vvi:100247653 380.178