Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0187 ATGGGTGTCGAAAATTATCATGTAATTGAGCTGGTAGGTGAAGGTTCTTTTGGGAAGGTATACAAAGGAAGGCGGAAGTTTACAGGGCAGACTGTTGCAATGAAATTTATTCTCAAGCATGGGAAAAGTGAGAAGGACATTCAGAATCTAAGACAGGAAATTGAGATTTTGAGGAAGCTGAAACATGAAAATATCATTGAAATGCTCGACTCCTTTGAGACCCCTCAAGAGTTCTGCGTTGTCACAGAATTTGCACAAGGAGAACTCTTTGAGATTCTTGAGGATGACAAGTGCCTTCCTGAAGAACAAGTTCAAGCAATTGCAAAGCAGTTGGTGAGAGCATTGCACTACTTGCACTCCAACCGTATCATACATCGAGATATGAAGCCACAAAATATTCTCATTGGTGCTGGTTCTATTGTTAAGCTTTGTGACTTTGGATTTGCACGTGCAATGTCCACAAATACGGTTGTTTTACGATCCATAAAAGGTACTCCTTTGTATATGGCCCCAGAGCTGGTACGGGAGCAACCCTACAACCACACTGCTGATTTGTGGTCTCTTGGAGTTATCTTGTATGAATTGTTTGTTGGTCAGCCTCCCTTTTATACAAATTCAGTATATGCACTCATCCGGCACATCATTAAGGATCCAGTTAAATATCCTGACAACATGAGTGCAAATTTCAGAAGCTTTCTAAAAGGATTGCTCAATAAGGTACCTCAAAATAGATTAACCTGGCCTGCACTTTTGGAACACCCATTTGTTCAAGAAACGTCAGATGAACTGGAGGCCAGGGAAATGCGTGCTGCAACTGCTGCAGCCAGGGGCTGTGATGCAGCATGGAGGGGTGAAGGAAACATCATCCAGGCTTCAACTGATAGAAGCCATTCTCCTGCTGCTTTTGAGAGCAATAATGCTTCAAAAATTCAATCTGGTGCTCAATCATGTAGTCCTAACTCTGCTACAGTCAATTCTTCACCACATGAGGAGTTCCCGGGATTTGGCAGTCCTAATGATGTTAATCAGTCAGGTTGCCAGACATTAGACAAATTAGAAAATAACTCTCGCACGGTCAAAGGTGCAAAAATTATTGGTCAAGACAATGAAGCATTAGCATTTATATTGCTTCCACTAAAAAAATGGTCTAAGGAGTCCCAAAACTCTGGCAGGGATCAAGACATGTTTAGTTCAAGCCAGTCACTTAAAATTCTTTCAAACCTAGTTGCAGCAGGTGCTATCCATTCTAGTGGACTACTTGATGAAATAATCTTTGAAGTTCTTGGATTTACTGCTGCTGCAGTTAATGTGAAATCAGCTGAAGCTAATGACTTAATAGCAAAGAGCTTCTCAATTATCAAAATGTTGGTAGATAATAGTGGAAGTGGCATTGGGAGTTCATATTTCCGGCACTGGGTTTCCTCGGTTGAAATCTTTTCCCAGGTTGTTGGCTGCAATGAAGATGCTTCAGGAAGAATTCTGTATGAGTGTAATGCTTGCATTGCAACCATGTTATCTCATGTAGCTCAGGGTCTTAAAGCATGTGCTCCAACGTTGGTTCCTGATGCAGCTTCTTCTCCTTCCAGGGTGAACGAAATCCTAAATCGGATTTTGGACCATGCCAAAACTTCTGGTTTAGTGGATCATTTGTGTCTATGTTTGGAAAATGCAGGCTTAAGTCTCTTATCTGGTTCTTCACATTTATTGCGTGCTGCTTGTGAAGCATGCAGGGCTATTTGGTCTCTAATAGATGCATTGGAAATTCTCTTTGTGAAAGAAAATGTATATTCATTTCCACTAAACACTTTGTGGAGCCACTCGTCACTCCAAATTGACAATAGGGAACAAGACCGAGGTTCATTGGTTGGGATAGAATCAGCAAAAATTGTTGATGTGGTGACAAGAGCATTCCTCCGGTCCAAAGACATACAGGTTGCTATCTACTATTGTCTTCATCAACGACTTGAAGCCCCACTTTCTGCTGGTATCCAGCTAATGTTGAGATGCTGCCTGCATAGTGGAATTGTTCCAAGTGTTCTTTGTGGCCTTCGAAGTTCTCTACCTGTTACTACTATTGTTAGTGGTGGAGGAGATGGTACTATTCTTTCAGAGATATTCTCCATATTATCTTTTTGTGCTTCATGTTCAAACAAAGATGCACAAACTGGCGAAACAAATAACTTGAAGGGCAAGATAACCAATCCTTGTGGCCTGGTTCTACATTCATGCCTTATCATTGCGACTGTTGCCCAGTGTTTAAAGTCATCCGGGAGAAATTCTGCTTTATTTATGCTCACAACTAATTCAAAAAAGCAGAGTTCCAGACTTTCACTCCTTGCCCACCATTTTTCTTCTGATGAGAGGATGAAAACTTCACTTCAACCTCATTGTGCATCAGCCATGCTGGCTCTTGCATCTATTCTTTCCCTTGAAACTGGAGTTTCTATTGAGTCCTCCATCTCTGAAATTGCAGTGCCACTGATCCCTCGTACTGCCACACTTTGCAACCACCTCAAGATTATATCAGGGGATGAAAATGAACTGGGTTCCACCATCCCAAATGGCATGCTATCTTATTGGCATGGCCTTAGGGATGGATGTGTTGGTTTATTAGAATCGAGGTTGAAGTGGGGAGGAGCATTAGCTGTTCAACAGCTTTGTGCAAGTGGCATCCCTCAGCTTCTTATTAATTTGTTGTATAACAACCATTCAAAGGCTTGTCCTCAAGGAATTGACAGCACAATAGATCGAGTAGGGCTCTCATCTGTAGGAGTTGTGTGGACAGTTTCTTCAATATGTCATTGCCTTTCAGGTGGAGCTTTAACTTTTCGTCAGACTTTGGTTCGGAATGAACACATCAAGCTCATCTCTTGCTTGATATCTGATGTACATCTCAAGCTTGTAAGGGTCTGGGGTGGTCCTGGTGGAGGGAAGGATGGGGTCAGAGATGTAATAAATGCAGTGATTGATCTCTTAGCATTTCCTTTTGTCGCAGTACAGAATGCTCCAGGTTTGCCATCTGCCACTGCTTCTGTAAACAGTGGTTTTCTTTTAAACATGGGTTCACCTGGTGGGAGAGTGTGCGTGGAAGACAAGGACATGGTGAAAGCAATTGAGGATGACATGGGAAAGTATATTAAAATTCTTATGGAGGTGGGAGTGCCTGGAATTATTCTCCGGTGCTTGGAGTATATGGAGCTAAAAGATATGGGAAGGCCTGTTGCTTTTCTTGCAAAAATGGCAAGCCATCGTCTTCTTGCGGTTCAACTTGTGGGCAAAGGCTTGTTGGACCCAAAAGGAATGAGACGCTTGCTTGATTGTTCATGCCCTAGAGAGGTCACTTTGGATGTTCTGATGATAATTTCTGATCTAGCTCGTATGGATAAGGCTTTCTATGAATATATAAATGGGGCCTGCATATTAGAGTTCTTGAGGGAGTTTCTTACTCATGAAGATCCCAATGTACGAGCAAAAGCTTGTAGTGCTATAGGCAACATGTGTCGGCACAGTTCCTATTTCTATGGTTCACTGGCTAGGCATCATATCATCAGTCTTCTAATTGATCGGTGTGCTGATCCAGACAAAAGAACAAGGAAATTCGCTTGTTTTGCAATTGGCAATGCTGCCTACCATAATGACAATTTGTATGAAGAGCTCAAGAGATCCATTCCTCAACTAGCAAATCTTCTGCTTTCAGCTGAGGAAGACAAGACCAAAGCAAATGCAGCAGGTGCATTAAGTAATCTTATTCGCAACTCTAACAAGCTCTGTGAAGATATCGTGTCCAAAGGAGCCTTGCAGGCTTTACTTAAGCTGGTAGCTGACTGTTCTGCAGTGGCCCTGAACCCAACTAGAAAAGATGCCATTAACGAGTCGCCTCTAAAGATAGCTCTCTTTTCTTTGGCAAAGATGTCCTCCCATCAGCCATGCAGGCAGTTTATCCGATCATCTGAGCTGTTCCCTGTAATTGGAAGGCTTCGACAATCCCCAGAATCAACAATTGCTAACTATGCATCTCTTATCATCAACAAGGTCTCAGAAGCTTGA 4047 0.423 MGVENYHVIELVGEGSFGKVYKGRRKFTGQTVAMKFILKHGKSEKDIQNLRQEIEILRKLKHENIIEMLDSFETPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIIKDPVKYPDNMSANFRSFLKGLLNKVPQNRLTWPALLEHPFVQETSDELEAREMRAATAAARGCDAAWRGEGNIIQASTDRSHSPAAFESNNASKIQSGAQSCSPNSATVNSSPHEEFPGFGSPNDVNQSGCQTLDKLENNSRTVKGAKIIGQDNEALAFILLPLKKWSKESQNSGRDQDMFSSSQSLKILSNLVAAGAIHSSGLLDEIIFEVLGFTAAAVNVKSAEANDLIAKSFSIIKMLVDNSGSGIGSSYFRHWVSSVEIFSQVVGCNEDASGRILYECNACIATMLSHVAQGLKACAPTLVPDAASSPSRVNEILNRILDHAKTSGLVDHLCLCLENAGLSLLSGSSHLLRAACEACRAIWSLIDALEILFVKENVYSFPLNTLWSHSSLQIDNREQDRGSLVGIESAKIVDVVTRAFLRSKDIQVAIYYCLHQRLEAPLSAGIQLMLRCCLHSGIVPSVLCGLRSSLPVTTIVSGGGDGTILSEIFSILSFCASCSNKDAQTGETNNLKGKITNPCGLVLHSCLIIATVAQCLKSSGRNSALFMLTTNSKKQSSRLSLLAHHFSSDERMKTSLQPHCASAMLALASILSLETGVSIESSISEIAVPLIPRTATLCNHLKIISGDENELGSTIPNGMLSYWHGLRDGCVGLLESRLKWGGALAVQQLCASGIPQLLINLLYNNHSKACPQGIDSTIDRVGLSSVGVVWTVSSICHCLSGGALTFRQTLVRNEHIKLISCLISDVHLKLVRVWGGPGGGKDGVRDVINAVIDLLAFPFVAVQNAPGLPSATASVNSGFLLNMGSPGGRVCVEDKDMVKAIEDDMGKYIKILMEVGVPGIILRCLEYMELKDMGRPVAFLAKMASHRLLAVQLVGKGLLDPKGMRRLLDCSCPREVTLDVLMIISDLARMDKAFYEYINGACILEFLREFLTHEDPNVRAKACSAIGNMCRHSSYFYGSLARHHIISLLIDRCADPDKRTRKFACFAIGNAAYHNDNLYEELKRSIPQLANLLLSAEEDKTKANAAGALSNLIRNSNKLCEDIVSKGALQALLKLVADCSAVALNPTRKDAINESPLKIALFSLAKMSSHQPCRQFIRSSELFPVIGRLRQSPESTIANYASLIINKVSEA* 1349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0187 1348 FunFam Serine/threonine-protein kinase TIO 1075 1344 - -
Vvi16g0187 1348 Pfam Protein kinase domain 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0187 1348 SMART arm_5 1128 1168 IPR000225 GO:0005515
Vvi16g0187 1348 SMART arm_5 1212 1251 IPR000225 GO:0005515
Vvi16g0187 1348 SMART arm_5 1253 1306 IPR000225 GO:0005515
Vvi16g0187 1348 SMART arm_5 879 931 IPR000225 GO:0005515
Vvi16g0187 1348 ProSiteProfiles Protein kinase domain profile. 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0187 1348 MobiDBLite consensus disorder prediction 294 332 - -
Vvi16g0187 1348 FunFam Aurora kinase A 1 88 - -
Vvi16g0187 1348 PANTHER PROTEIN KINASE RELATED 3 1346 - -
Vvi16g0187 1348 Gene3D - 1078 1345 IPR011989 -
Vvi16g0187 1348 ProSitePatterns Protein kinases ATP-binding region signature. 12 39 IPR017441 GO:0005524
Vvi16g0187 1348 Pfam HEAT repeat 1140 1169 IPR000357 GO:0005515
Vvi16g0187 1348 SUPERFAMILY ARM repeat 1042 1346 IPR016024 -
Vvi16g0187 1348 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Vvi16g0187 1348 SUPERFAMILY Protein kinase-like (PK-like) 4 332 IPR011009 -
Vvi16g0187 1348 Coils Coil 40 67 - -
Vvi16g0187 1348 CDD STKc_STK36 4 256 - -
Vvi16g0187 1348 FunFam Serine/threonine-protein kinase 36 3 320 - -
Vvi16g0187 1348 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vvi16g0187 1348 SMART serkin_6 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0187 1348 Coils Coil 1216 1236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0187 Vvi-Chr16 2545020 2562330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0187 1 307 AGC Kinase Gene Family AT3G08720 35.625 4.03e-47 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Vvi16g0187 Pkinase 4.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0187 K06228 - vvi:100257868 2599.7