Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0179 ATGAACCAGGTGGATATTGTGGCATCATTTCAAACCAACTATTTCACTTCAGAAGTTGCTCCTTTTGGTGATTCTTTGGTTGTTCTAGCCTATATTCTTGGAGAAGAAGATGGAGAGAAAGAATTTAGCAGCACCATTCCATCACGCCAGGGAAATGCGCAAAGACCTGAAGTACACATAGTCATATGGAATAATGATGAGCTTGCGACAGATGCCTTGCCTGTACATGGCTTTGAGCATTACAAGGCAAAGGACTATTCCCTTGCTTATGCTCTTTTCACGGGTAGTAACTATGCTGGTGGTCAGTGGAAAAGTTGGGGAGTCGAAAGAATACTCAGTGGAAAAGCTGGAGAGTTGAAAGAATACTCAGTGGACTTACTGCATGCAGAAGGTGTTAAATTTGAAGGTCATGGGCAAATCCAAGAAGCTTTGGCTGCTTATATCAATGCCCTTTTACTAGATCCGGGTTATGTGCCTTGCAAGATCTTGATTGGTGCTCTGTTGTTGAAGATGGGCTCGAAGGCATTTCCTGCTGCGAGAAACCTACTTTCAGATGCATTGAGGATGGAGCCTACCAACCAAATGGCTTGGTACTACCTGGGAATGGCTCACAAAGATGATGGACGAATAGCTGATGCTACAGACTGCTTCCAAGCAGTCTCCAATCTTGAAGAATCCAATCCCCTTATTCCACCCCGGTCCCATGCATGCACGTATCTAGTTGCATGA 729 0.4458 MNQVDIVASFQTNYFTSEVAPFGDSLVVLAYILGEEDGEKEFSSTIPSRQGNAQRPEVHIVIWNNDELATDALPVHGFEHYKAKDYSLAYALFTGSNYAGGQWKSWGVERILSGKAGELKEYSVDLLHAEGVKFEGHGQIQEALAAYINALLLDPGYVPCKILIGALLLKMGSKAFPAARNLLSDALRMEPTNQMAWYYLGMAHKDDGRIADATDCFQAVSNLEESNPLIPPRSHACTYLVA* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0179 242 SUPERFAMILY TPR-like 115 229 IPR011990 GO:0005515
Vvi16g0179 242 PANTHER PROTEIN NPG1 110 229 IPR043376 -
Vvi16g0179 242 SMART tpr_5 194 227 IPR019734 GO:0005515
Vvi16g0179 242 SMART tpr_5 124 157 IPR019734 GO:0005515
Vvi16g0179 242 Gene3D Tetratricopeptide repeat domain 59 238 IPR011990 GO:0005515
Vvi16g0179 242 ProSiteProfiles TPR repeat profile. 194 227 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0179 Vvi-Chr16 2470087 2470815 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0179 90 229 Calmodulin-binding Proteins AT2G43040 52.448 2.57e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0179 K20184 K21843 vvi:100267895 217.238