Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0167 ATGATTAAGCTGCAAACATATGCGGGGCTTAGTTTAGTTGCTACTCTGGCTGTTATCTATCATGCGTTTAACAGTAGAGGCCAGTTCTACCCAGCTACAGTTTATCTATCAACGTCCAAAATCAGTTTGGTGCTCCTCCTCAACATGGGTCTAGTCATCATGTGCATTCTGTGGCAACTAACTAAGCGTGTTTTTCTTGGGTCCCTACGAGAAGCTGAGGTTGAGAGACTGAATGAGCAATCATGGCGGGAAGTCATGGAAATACTTTTTGCAATAACTATTTTCCGACAGGACTTTTCAGTTACTTTTCTTGCTATGGTTACTGCTCTTCTGTTAATCAAAGCTTTACATTGGTTGGCCCAGAAGAGAGTTGAGTACATTGAGACAACCCCTTCGGTTCCTATGTTGTCTCATATCCGTATTGTATCATTTATGGGCTTCCTTCTTATCCTGGATAGTCTCTTTCTGTACAGTTCTTTAAAGTATTTGATACAAACACGGCAGGCTTCAGTTTCCCTCCTCTTTTCTTTTGAGTACATGATACTCGCAACAACAACTGTGTCAACATTCGTAAAATATGTTTTCTATGTCAGTGACATGCTTATGGAAGGACAATGGGAGAAAAAGGCTGTCTACACCTTTTACTTGGAACTTATACGAGACTTGCTTCACTTGTCTTTGTATCTGTGCTTCTTTCTTGTGATTTTCATGAATTATGGTGTGCCTTTGCACTTGATTCGGGAGCTCTATGAAACATTCCGTAACTTCAGGGTCCGTATTGCTGATTACATTCGTTATAGGAAGATGACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCTGAAGAACTTGATGCAAGTGATGCAACCTGCATCATTTGTCGTGAGGAGATGGTTACAGCCAAGAAACTAATTTGTGGACATCTTTTTCATATGCATTGTCTCCGTTCATGGTTAGAGCGACAGCATACTTGTCCTACTTGCAGAGCCCTAGTTGTACCCCCTGAAAATGGGACAACTACTGCTGGAGGGCAACATGGGCCACGGTCTGATTTTCATCAAGCAAGTACATCCACACAGGGTTTGACTGGTGATGTAGCAGATGATAATTTGAATTGGCATCGGGCCAGACTCCAAGCTGCTGCTTCAGCTGCCGCAATATATGAAAAATCTTTTGTGTACCCTTCTCCAAATACACTAGTGTGGTCCCCTGGATATGTATCACTCCCCCAGGCATCTGGTGCCACCATGAACTATGGAGATAGACTCAGTGGTGATCTAAACATACCGGGCTCTCAGATGGAAGCTCAGAAGAAATTTCTTGAATACCATATTGAGGTCTTGCAAAACCAGCTCCAACTTCTACAGAAACTATCGAAACCAGAGGAAGGCATGGGCATGGCCCCCACTGCATCATCAGCTGGCAAGGGAAAGGACGTTGCTTCTTCATCTTCTTCTGTTCCAGACTCGGGTCATCATGGAGAAATTGAAGAAACTGATACATAG 1509 0.4301 MIKLQTYAGLSLVATLAVIYHAFNSRGQFYPATVYLSTSKISLVLLLNMGLVIMCILWQLTKRVFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVPMLSHIRIVSFMGFLLILDSLFLYSSLKYLIQTRQASVSLLFSFEYMILATTTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSLYLCFFLVIFMNYGVPLHLIRELYETFRNFRVRIADYIRYRKMTSNMNDRFPDATPEELDASDATCIICREEMVTAKKLICGHLFHMHCLRSWLERQHTCPTCRALVVPPENGTTTAGGQHGPRSDFHQASTSTQGLTGDVADDNLNWHRARLQAAASAAAIYEKSFVYPSPNTLVWSPGYVSLPQASGATMNYGDRLSGDLNIPGSQMEAQKKFLEYHIEVLQNQLQLLQKLSKPEEGMGMAPTASSAGKGKDVASSSSSVPDSGHHGEIEETDT* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0167 502 Coils Coil 439 459 - -
Vvi16g0167 502 MobiDBLite consensus disorder prediction 462 502 - -
Vvi16g0167 502 SUPERFAMILY RING/U-box 272 336 - -
Vvi16g0167 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Vvi16g0167 502 SMART ring_2 292 329 IPR001841 -
Vvi16g0167 502 MobiDBLite consensus disorder prediction 477 491 - -
Vvi16g0167 502 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Vvi16g0167 502 PANTHER RING ZINC FINGER PROTEIN 3 474 - -
Vvi16g0167 502 MobiDBLite consensus disorder prediction 340 360 - -
Vvi16g0167 502 CDD RING-H2_synoviolin 289 330 - -
Vvi16g0167 502 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 264 339 - -
Vvi16g0167 502 Pfam Ring finger domain 291 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0167 Vvi-Chr16 2285920 2292765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0167 1 485 C3H Transcription Factor Family AT3G16090 68.379 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0167 K10601 - vvi:100252838 953.74