Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0161 ATGACGATATCCATGGTTTTCAGAGCTAATTCCATCAATCACACCCCTTCCTTCCCCAATCCAACAAAAACCCACTTCCTCTCTCCCCAAAACCTCCTACATTTCTACAAGAAAACCCCACTCAAAAACCACATTGGAGAGTTCTCATGCTCATCACCAGGCCCAGTAGTGGTGGGGTTGGCAGCAGACTCTGGGTGTGGGAAGACCACCTTCATGAAGAGACTCACAAGTGTCTTTGGAGGAGCACCAAAAGCTGATCATAATCATCAAAACCCAGACTCCAACACTCTCATCACCGACACCACAACCGTGATCTGCTTGGATGATTACCATTTGCTTGACAGAAAGGAGAGGAAAGAGAAGGGTGTGACTGCACTTCACCCAAGAGCCAACAACTTTGATCTCATGTTTGAACAGATCGAAGCTCTCAAACATGGTTTCCCTATTGAGAAGCCCATCTACAACCATGCCACTGGCCTCTTAGATCCTCCTGAACTCATTCATCCTCCTAAGATCCTAGTACTTGAGGGATTGCACCCACTGTACGATTCTCGAGTGAGAGACCTTTTGGACTTCAGCATATACTTGGACATCAGCAATGAAGTCAAATTTTCCTGGAAAATTCAGAGAGACATGGCAGAACGTGGGCACAGCCTAGAAAGTGTTAGAGCTAGTATTAAAGCCCGTAAATCCGATTTTGATGCTTACATTGAACCCCAAAAGCAATATGCATCGGTAGTCATGGAAGTCCTTCCCACGCAGCTTATTCCCGACGACACCGAGAGGAAGGTCTTGAGGGTTCGACTGATAATGAAAGAATCCGGAGTCAAGAACTTCCAACCAATCTACATTTTCGACGAGGGCTCGACCATTTCTTGGGTGCCATGCGGAAGAAAACTCACCTGCTCGTATCCTGGCATCAAGTTCTTCTGTGGCCCCGAAGCTTACTTTGAAAACGAGGTGACGGTGTTGGAGATGGATGGGGAATTCGACAAGCTGGAGGAACTGGTGTATGTTGAAGGGCATCTGTGCAACGTCTCGACAAAGTTCTATGGAGAAGTTACGCAACAGATGTTGAAGAACTGTGATTTTGAAGGAAGTAACAATGGCACTGGTTTCTTCCAGACGTTGATCGCTTTAAAGATTCGAGATCTTTACGAGCAGGTCGCCATGAGTAATGGTGTTGGCGATGGTGTTGGAGTTGGCTCACTGGCATCGACTAAGTAA 1227 0.4662 MTISMVFRANSINHTPSFPNPTKTHFLSPQNLLHFYKKTPLKNHIGEFSCSSPGPVVVGLAADSGCGKTTFMKRLTSVFGGAPKADHNHQNPDSNTLITDTTTVICLDDYHLLDRKERKEKGVTALHPRANNFDLMFEQIEALKHGFPIEKPIYNHATGLLDPPELIHPPKILVLEGLHPLYDSRVRDLLDFSIYLDISNEVKFSWKIQRDMAERGHSLESVRASIKARKSDFDAYIEPQKQYASVVMEVLPTQLIPDDTERKVLRVRLIMKESGVKNFQPIYIFDEGSTISWVPCGRKLTCSYPGIKFFCGPEAYFENEVTVLEMDGEFDKLEELVYVEGHLCNVSTKFYGEVTQQMLKNCDFEGSNNGTGFFQTLIALKIRDLYEQVAMSNGVGDGVGVGSLASTK* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0161 408 Gene3D - 52 284 IPR027417 -
Vvi16g0161 408 CDD PRK 57 348 - -
Vvi16g0161 408 FunFam Phosphoribulokinase 52 284 - -
Vvi16g0161 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 328 IPR027417 -
Vvi16g0161 408 PRINTS Phosphoribulokinase family signature 172 190 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi16g0161 408 PRINTS Phosphoribulokinase family signature 207 224 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi16g0161 408 PRINTS Phosphoribulokinase family signature 225 248 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi16g0161 408 PRINTS Phosphoribulokinase family signature 62 79 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi16g0161 408 ProSitePatterns Phosphoribulokinase signature. 207 220 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi16g0161 408 Pfam Phosphoribulokinase / Uridine kinase family 57 256 IPR006083 GO:0005524|GO:0016301
Vvi16g0161 408 PANTHER URIDINE KINASE 48 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0161 Vvi-Chr16 2190852 2193415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0161 127 248 PRT Gene Family AT3G27440 34.127 5.80e-18 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0161 K00855 - vvi:100256246 825.083