Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0155 ATGAATAAAGGTGATATGGAAACAACTGGTGAGGATTACTCTGTAGAATCCACAAATGGCAAGAGGCCATTCTACGCCTTTCTTAATGTCGGACTTGTGAAAACATCAATTGGCAATTGTGTGTTTGGTGTTCTGAAGGAAGCATTGGATGGTAGCTTGAACATTCCCCACAATGACAGGAGATTTGTTGGGTCCTCAAAGGACAACAAGCAGCTTGATGCCAAGGTTCACCGAAAGAGTATTTATGGTGGCTATGTTAGTGCATATATAGAGACTCTTAAGACATTTCTGTAG 294 0.4116 MNKGDMETTGEDYSVESTNGKRPFYAFLNVGLVKTSIGNCVFGVLKEALDGSLNIPHNDRRFVGSSKDNKQLDAKVHRKSIYGGYVSAYIETLKTFL* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0155 97 SUPERFAMILY Translational machinery components 20 94 - -
Vvi16g0155 97 PANTHER RIBOSOMAL PROTEIN L5-RELATED 3 94 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi16g0155 97 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 3 58 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi16g0155 97 PRINTS Ribosomal protein L5 signature 27 46 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi16g0155 97 PRINTS Ribosomal protein L5 signature 47 66 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi16g0155 97 Gene3D - 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0155 Vvi-Chr16 2156928 2157221 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0155 3 93 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 60.440 1.45e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0155 K02932 - pvy:116131806 134.806