Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0152 ATGATCTCCATTGAAACCCAAAACCCGGATGTTTCCAACCTTGACACTAGTCACTCTATCCCCAAAATGGCCAATCGAATTGACGACCATGTTTTCAGATCAAAACTCCCTGAAATTCCCATCTCCAACCACCTCCCTCTCCACACCTACTGCTTTGAAAACTACTCCCAATTCGCCGATCGTCCATGCTTGATCGTCGGATCCACCAACAAAACCTACTCCTTTGCAGAAACCCACCTCATTTCTCGCAAAGTCGGAGCTGGGTTCGCCCACCTCGGCCTCAAACAGGGAGACGTCGTCATGATCCTCCTCCAGAACTGCGCCGAATTCGCGTTCTCCTTTCTCGGAGCTTCCATGGTCGGAGCCGTCACCACCACCGCCAACCCCTTCTACACTTCGGCCGAAATTTTCAAGCAGTTGAATGCTTCCAAGGCGAAAATCGTCGTCACGCAGGCGCAGTACGTCGACAAGCTCCGGGACTACCCCGACGGACAGGTGGCAAAGATCGGAGAAGGTTTCACCGTCATTACCATCGACGATCCGCCGGAGAACTGCATGCATTTCTCGGTGGTGTCGGAGGCGAACGAGAGCGAACTTCCGGAGGTTTCGATCAACTCCGACGACCCAGTGGCGCTGCCGTTCTCCTCTGGCACTACCGGGCTTCCGAAGGGGGTGGTCCTGACGCACAAGAGCTTGATCACAAGCGTGGCTCAGCAGGTGGACGGCGAGAACCCTAACCTCCACCTGACGCCGGACGACGTCGTTTTGTGTGTGCTGCCGCTGTTCCACATATACTCTCTGAACAGCGTGCTTCTCTGCTCGCTGAGGGCCGGCGCGGCGGTGCTGCTGATGCAGAAGTTCGAGATTGGAACTCTGCTGGAGCTGATCCAGCGCTACCGGGTGTCGGTGGCGGCGGTGGTGCCCCCGCTGGTGCTGGCGCTGGCGAAGAACCCGATGGTGGAGAGCTTCGACCTGAGCTCAATCCGGGTGGTGCTGTCCGGGGCAGCCCCGCTGGGGAAGGAGCTGGAGGCGGCTCTCCGGAGCAGGGTGCCTCAGGCGGTGCTTGGCCAGGGTTATGGAATGACAGAGGCCGGACCGGTGTTATCGATGTGCCTAGCCTTCGCCAAGCAGCCCTTTCCTACTAAGTCCGGCTCGTGCGGCACCGTTGTCCGCAATGCTGAGCTCAAGGTCGTCGACCCTGAGACCGGTTGCTCCCTCGGCCGCAACCAACCGGGCGAGATCTGCATTCGAGGACAACAGATTATGAAAGGATACTTGAACGATCCCGAGGCCACGGCCTCTACCATCGATGTTGACGGTTGGCTACACACCGGTGACATTGGCTATGTTGACGATGATGAAGAGGTGTTCATCGTAGATAGAGTGAAAGAACTCATCAAATTCAAAGGCTTCCAGGTACCGCCTGCTGAGCTTGAGGCCCTTCTGGTGAGTCACCCATCAATTGCTGATGCAGCTGTTGTCCCGCAAAAAGATGATGTTGCAGGTGAAGTTCCTGTTGCATTTGTGGTTAGATCAAACGGGTTTGAACTCACTGAAGAGGCTGTGAAAGAGTTCATATCGAAACAGGTTGTGTTCTACAAAAGACTGCACAAGGTGTACTTTGTTCATGCCATTCCAAAGTCACCATCAGGGAAAATTTTAAGAAAAGACCTCAGAGCTAAACTAGCAGAAAAGACCCCAGAGCCAAACTAG 1713 0.5517 MISIETQNPDVSNLDTSHSIPKMANRIDDHVFRSKLPEIPISNHLPLHTYCFENYSQFADRPCLIVGSTNKTYSFAETHLISRKVGAGFAHLGLKQGDVVMILLQNCAEFAFSFLGASMVGAVTTTANPFYTSAEIFKQLNASKAKIVVTQAQYVDKLRDYPDGQVAKIGEGFTVITIDDPPENCMHFSVVSEANESELPEVSINSDDPVALPFSSGTTGLPKGVVLTHKSLITSVAQQVDGENPNLHLTPDDVVLCVLPLFHIYSLNSVLLCSLRAGAAVLLMQKFEIGTLLELIQRYRVSVAAVVPPLVLALAKNPMVESFDLSSIRVVLSGAAPLGKELEAALRSRVPQAVLGQGYGMTEAGPVLSMCLAFAKQPFPTKSGSCGTVVRNAELKVVDPETGCSLGRNQPGEICIRGQQIMKGYLNDPEATASTIDVDGWLHTGDIGYVDDDEEVFIVDRVKELIKFKGFQVPPAELEALLVSHPSIADAAVVPQKDDVAGEVPVAFVVRSNGFELTEEAVKEFISKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLAEKTPEPN* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0152 570 Gene3D - 463 566 IPR045851 -
Vvi16g0152 570 ProSitePatterns Putative AMP-binding domain signature. 212 223 IPR020845 -
Vvi16g0152 570 FunFam Long-chain-fatty-acid--CoA ligase FadD 33 463 - -
Vvi16g0152 570 FunFam 4-coumarate--CoA ligase 2 464 565 - -
Vvi16g0152 570 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 28 560 - -
Vvi16g0152 570 Pfam AMP-binding enzyme C-terminal domain 477 552 IPR025110 -
Vvi16g0152 570 CDD 4CL 41 558 - -
Vvi16g0152 570 SUPERFAMILY Acetyl-CoA synthetase-like 43 565 - -
Vvi16g0152 570 Pfam AMP-binding enzyme 54 468 IPR000873 -
Vvi16g0152 570 Gene3D - 23 462 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0152 Vvi-Chr16 2123374 2128097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0152 31 475 Monolignol Biosynthesis Gene Families AT1G65060 71.429 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0152 K01904 - vvi:100245991 1114.75