Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0140 ATGGCAAGAACACAGCAGAAGAAATCGCTATGGACCCCAGAAGAAGACGATAAGCTCAAAGAATTTAGGCACAAATACCCCAATCTATCTTGGCCAGCTATCGCAAAGCAGGCAGAGCTGAACAGGACTGGTAAGAGTTGTTGGGAGAGTTGGGAGAACAATCTGAATCCTGATATCAACAAAGGGGAATTCTCCCCACAGGAAGATGAACTCATCATCCCGCTAAAGAGCGCCGGTGTGAGCTGGGCATCTATGGCAAAAAATGATCTTCGTGGGCGAGCTCCTAATGCTATCAAGAACCGGTGGAACAACCACTTAAAGAAGAGGCATGCGATTATAAGTGACCTTAGGCGACACCTCCTCTACCTAGAGGAACACCTCATGGATGATAAGGCTAGTGATTACTCTGTCCGGGGAGGTGACCTTAAGGCTTTGATGGCTGAGTTTGCTTCTTTGATTCCCAACGTTGATCCAAATGAGACTAGTGATCACTCTATCCGGGGAGATGACCTTGAGGCTTTGATGGCCAAGTTTGCTTCTTTGATTCCCAATGTTGACCCAAATGAGAGTAGTGATCACTCTATCCGGGAAGATGACCTTGAGGCTTTGATGGCCAAGTTTGCTTCTTTGATTCCCAACGTTGATGCAAATGAGACTAGTGATCGCTCTATCCGGGGAGATGACCTTGAGACTAGTGATCACTCTATCCGGGGAGATGACCTTGAGGCTTTGATGGCCAAGTTTGCTTCTTTGATTCCCAACGTTGATCCAAATGAGACTAGTGATCACTCTATCCGGGGAGATGACCTTGAGGCTTTGATGGCCAAGTTTGCTTCTTTGATTCCCAACGTTGATCCAAGTGCAATTAGTTCGATTCCTGAATACACCAGCTGA 894 0.4676 MARTQQKKSLWTPEEDDKLKEFRHKYPNLSWPAIAKQAELNRTGKSCWESWENNLNPDINKGEFSPQEDELIIPLKSAGVSWASMAKNDLRGRAPNAIKNRWNNHLKKRHAIISDLRRHLLYLEEHLMDDKASDYSVRGGDLKALMAEFASLIPNVDPNETSDHSIRGDDLEALMAKFASLIPNVDPNESSDHSIREDDLEALMAKFASLIPNVDANETSDRSIRGDDLETSDHSIRGDDLEALMAKFASLIPNVDPNETSDHSIRGDDLEALMAKFASLIPNVDPSAISSIPEYTS* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0140 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 110 IPR017930 -
Vvi16g0140 297 Gene3D - 63 109 - -
Vvi16g0140 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Vvi16g0140 297 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vvi16g0140 297 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vvi16g0140 297 Gene3D - 7 61 - -
Vvi16g0140 297 Pfam Myb-like DNA-binding domain 11 71 - -
Vvi16g0140 297 SUPERFAMILY Homeodomain-like 8 107 IPR009057 -
Vvi16g0140 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 6 115 - -
Vvi16g0140 297 CDD SANT 11 55 IPR001005 -
Vvi16g0140 297 SMART sant 7 57 IPR001005 -
Vvi16g0140 297 SMART sant 60 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0140 Vvi-Chr16 1906509 1907646 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0140 7 109 MYB Transcription Factor Family AT1G34670 50.962 7.20e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0140 Myb_DNA-bind_6 5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0140 K09422 - vvi:104881978 536.569