Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0138 ATGGAGCTTTTTCCAGCACAACCTGATTTATCCCTCCAAATTAGCCCACCAAACACCAAACCCACATCAAGTTGGAGTAGAAGAGATCATCAAGAGGCGGATTTAGGGTTTTGGAGAAGTTCCATGGATTCCAACAAAGCCACTCCTTCTTCGCGAAAACCCGACACCGCCTCCGACCTCTCCCTCGCAAATCCAAAGGCCTTGGAGCCCTCCTCCAACCACATCCACGCACTCCACCCCAAGTATCACACCCTCTTGGCTCCACCGCAACTACAACAGAAATATCATCATCATCAAGAAGGCCTTCACCAACAAATTGGCTTCCTTAGACCTATCAGAGGAATCCCCATATACCAAAGCACCCCTCCTTCATTCTCCTTCCCTCACCAACACTCATTGGACTCATCTCCATCTACAATATCCACCACCTGCTTCAACTCCAATGGCCTCCAGCGATCGCGATTCATATCAAGATTTCCCACCAAGAGAAGCATGAGGGCTCCCCGAATGCGGTGGACCACCACCCTACATGCCCGCTTCGTCCACGCCGTCGAGCTCCTCGGTGGCCATGAAAGAGCTACACCCAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACTTTGGCTCATGTGAAATCCCATTTACAGATGTATCGGACCATTAAAACCACCGACAGGCCTCCAGCTTCGTCAGGACAATTGGATGGATTAGAAGGGAGGTTAGCAGGCGAGCTTTCGGAGGACAACATGGTGGATATCGAGAAGAACCCGCAAAGATGTGAGCTTGTTCATCAGAGCAGACTGGGTTTTGATCAAGATTTGGACTCCTGCAGCCTCTGGAAAAATTCGTCAAGGGATGATGCTTGGTTGCATGGAAAGCCTAGAGATTCTAGAGGAAGCACAACCCCTTTTGAGGATACTGCAAGCCATGAAAGAGTAGTGATGGATGTGAACTCAACAAGCTTTTCAAGAATGAGCCCCAAGAAACCCAATTTGGAGTTCACTTTAGGGAGGTCACAATGA 1026 0.4922 MELFPAQPDLSLQISPPNTKPTSSWSRRDHQEADLGFWRSSMDSNKATPSSRKPDTASDLSLANPKALEPSSNHIHALHPKYHTLLAPPQLQQKYHHHQEGLHQQIGFLRPIRGIPIYQSTPPSFSFPHQHSLDSSPSTISTTCFNSNGLQRSRFISRFPTKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTIKTTDRPPASSGQLDGLEGRLAGELSEDNMVDIEKNPQRCELVHQSRLGFDQDLDSCSLWKNSSRDDAWLHGKPRDSRGSTTPFEDTASHERVVMDVNSTSFSRMSPKKPNLEFTLGRSQ* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0138 341 Gene3D - 167 224 - -
Vvi16g0138 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 168 222 IPR006447 GO:0003677
Vvi16g0138 341 SUPERFAMILY Homeodomain-like 165 222 IPR009057 -
Vvi16g0138 341 MobiDBLite consensus disorder prediction 302 341 - -
Vvi16g0138 341 MobiDBLite consensus disorder prediction 1 70 - -
Vvi16g0138 341 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 340 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vvi16g0138 341 Pfam Myb-like DNA-binding domain 169 220 IPR001005 -
Vvi16g0138 341 FunFam Myb family transcription factor 166 224 - -
Vvi16g0138 341 MobiDBLite consensus disorder prediction 289 341 - -
Vvi16g0138 341 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0138 Vvi-Chr16 1825309 1829367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0138 1 338 G2-like Transcription Factor Family AT4G17695 37.637 3.86e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi16g0138 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0138 - - vvi:100256368 702.975