Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0137 ATGATGAAGTCAGGGATTGTTCCTGAAGTAGTTGACAATACCAGTATGAGTAGGCATAGTAACAATGAATCAGTTTATCAATCAAGTGGATCTGTCATTGCAAAAAGGATCACATCAAAGGGAAAAGTTGATAATTTTGATACAACTGATCTAGAATGGACAGATAAAATTCCAGAATGTCCTGTGTTCAAGCCATCAAAGGAGGAGTTTGAGGATCCTTTGGTTTATCTGGAAAAGATTAGTCCAGAAGCTTCAAGATATGGGATTTGCAAGATTGTTTCCCCACTGAATGCTTCTATTCCTGCTGGCGCGGTACTAGCTAAAGAGAACACTGGCTTCAAGTTTACTACTAGAGTGCAGCCCCTTTGGCTTCCTGATTGGAATGTGGATGATAAGGTCATATTTTTCATGAGAGGAAGAAATTATACACTCCATGACTTTGAAAATATGGCAAACAAGGAGTTTTCTAGTAAATATTGTTGTTCTGGATCCCTTCCTTCCATGTATTTGGAAAAGGAATTTTGGCATGAAATAGCTTCTGGAAGGAAAGGAACAGTCGAGTATGCAATCAACATTGATGGTAGTGCCTTTTCATGTGCTTCCAATGATCAGCTCGGCAAAAGCAAATGGAATTTGAAGACTCTTCCACAGCTGCCCAAGTCCCCATTGCGCCTGTGTGAAACTTCAATTCCGGGAGTAACCGATCCCATGCTTTACATTGGTATGCTGTTTAGTATGTTTGCATGGCATGTAGAAGATCATTATTTGTACAGCATCAACTACCATCACTGTGGGGCACCCAAGACTTGGTATGGCGTTCCAGGTCATGCAGCTCCGGATTTTGAAAGGGTAGTACAGAATCATGTCTACACTGATCATATTCTACCATCAACTAAACGAGAGGATGGAGCTTTTGCTGTTCTTGCAGAGAAAACGACGATGTTTGCTCCATGTACTTTGCTGCAACACGATGTACCTGTTTACAAGGCTGTGCAGATGCCAGGAGAGTTTGTCATCACCTTCCCAAAAGCATATCATGCAGGTTTCAGTCAAGGCTTTACTTGTGGCGAGGCAGTAAACTTTGCAGTTGGTGATTGGTTTCCATTCGGGGCAGAAGCAAGCCAGAGGTATTCACGCCTTTGCAGGATGCCAATCATTCCTTATGAGGAACTTCTCTGCAAAGAAGCAATGCTTCTCCATAATTCCCAAGAACAGGGGGGCTTAGCTCATTCGTCTGCAGACTTGGCCTCCTACCATTGTGTTAAGGTTTCCTTTATATGCCTAATACAATCCCATCACCATGCTTGCCAGTTCTTAAAGAAAATCAAAGGATCTCCAAGTGTGTCTCCAAATTCTCAAGGAACTATACTCTGCAGCCTCTGCAAGCGTGACTGTTATGTTGCATATATCAATTGCAATTGCTATTCGCGTCCTATTTGTCTATTCCATGAGATTGAGGCTCTTAACTGTCCCTGTGGGAACAACCCCATTCTTTTTCTGAGGGAGGACGTGTCGAAAATGGAAAAAATAGCTAAAAAGTTTGAGCAGGACAAAGGAATCATGCGAGAAGTTCATCGATACAAAGATGACAAATGCCTGCAGAAGAATGAAACAACTTTGAAGGTCTCCAAACAGCAGGAGCTTAAACCCGGGTACAAGTTTCGCCGCCAAGGAATTGCAGGAACAAGGAATCCAAGGAGAAAGAATGATGTTGAGGAGAGAGTGGGAGAAACTGCAGAAACCAGAACAGAGTGCCATAAATTGAGAGGAACACCATTTTCCAGAGGAAGAAAGAGGAGGAAGATGAAGAGCAGACAACAGAAGTCTAAAAAGAGCTCTAGCAGACTCAAAACAGAAGAAAAAGAAAGAAAGCCATATATAGTTAAACATCCAAACAGAAAGCCTAAAAATAACTAG 1917 0.4204 MMKSGIVPEVVDNTSMSRHSNNESVYQSSGSVIAKRITSKGKVDNFDTTDLEWTDKIPECPVFKPSKEEFEDPLVYLEKISPEASRYGICKIVSPLNASIPAGAVLAKENTGFKFTTRVQPLWLPDWNVDDKVIFFMRGRNYTLHDFENMANKEFSSKYCCSGSLPSMYLEKEFWHEIASGRKGTVEYAINIDGSAFSCASNDQLGKSKWNLKTLPQLPKSPLRLCETSIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGAPKTWYGVPGHAAPDFERVVQNHVYTDHILPSTKREDGAFAVLAEKTTMFAPCTLLQHDVPVYKAVQMPGEFVITFPKAYHAGFSQGFTCGEAVNFAVGDWFPFGAEASQRYSRLCRMPIIPYEELLCKEAMLLHNSQEQGGLAHSSADLASYHCVKVSFICLIQSHHHACQFLKKIKGSPSVSPNSQGTILCSLCKRDCYVAYINCNCYSRPICLFHEIEALNCPCGNNPILFLREDVSKMEKIAKKFEQDKGIMREVHRYKDDKCLQKNETTLKVSKQQELKPGYKFRRQGIAGTRNPRRKNDVEERVGETAETRTECHKLRGTPFSRGRKRRKMKSRQQKSKKSSSRLKTEEKERKPYIVKHPNRKPKNN* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0137 638 MobiDBLite consensus disorder prediction 563 591 - -
Vvi16g0137 638 MobiDBLite consensus disorder prediction 592 611 - -
Vvi16g0137 638 ProSiteProfiles JmjC domain profile. 204 378 IPR003347 -
Vvi16g0137 638 Pfam C5HC2 zinc finger 458 510 IPR004198 -
Vvi16g0137 638 MobiDBLite consensus disorder prediction 551 638 - -
Vvi16g0137 638 SMART cupin_9 204 378 IPR003347 -
Vvi16g0137 638 FunFam Lysine-specific demethylase isoform A 55 405 - -
Vvi16g0137 638 SUPERFAMILY Clavaminate synthase-like 138 394 - -
Vvi16g0137 638 Gene3D Cupin 60 419 - -
Vvi16g0137 638 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 613 - -
Vvi16g0137 638 MobiDBLite consensus disorder prediction 612 627 - -
Vvi16g0137 638 Pfam JmjC domain, hydroxylase 237 361 IPR003347 -
Vvi16g0137 638 SMART JmjN_1 59 100 IPR003349 -
Vvi16g0137 638 Pfam jmjN domain 61 93 IPR003349 -
Vvi16g0137 638 ProSiteProfiles JmjN domain profile. 60 101 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0137 Vvi-Chr16 1809110 1812160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0137 35 527 JUMONJI Transcription Factor Family AT1G08620 30.623 6.33e-60 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vvi16g0137 JmjC 1.7e-38 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0137 - - vvi:100261453 1289.25