Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0135 ATGACTCGATCTTTCAAGACGGCAGATGAAATTTGGTTCTTTTCTCCATCCTCTCTCTCTTCTGATGAAGTTGCTAATGCATTCAATTCAATACAGCAGTCTGGCAATCCATCCGAAGATGTATTCAACTCGTTCCAGAAGTCGGTTGATTCGACTTTCAAATGGACTGTCGTGGCTTCAATCTTTTCTTCTGTAGTGGTCGTTGTTGCCGTGGTTGCTGTAGTGCTGGCGCTCATAGACTGTTTGAAGAAGACGGGAACGGCGATTCCAAAGTTTGCTCGAATATCAAGTAAAGACGATGATGAACCTTTCAATAAAACTTCCATGGAAGATACACAGAAGGTACAAGACGCAGTGCCATCAGGTTACCCCATAATTTCAGACTCACAGCTCAAAACAGGCACCATGGAGATATTCCTTAGTGAAATGGAACGAGAGAAGCCCACCAGGTTTTCACCTCAGCAGCTTGCTAGATTCACTTCTGACTTCTCCATGGTACTGGGATCTGGAGGTTTTGGAGTCGTCTACAAAGGGGAGTTCCCAAATGGTCTGCCGGTGGCCGTCAAAGTGATCAACAGCAATTCGGAGAAGAAGGTTGCAGAGCAGTTCATGGCGGAGGTAGCCTCCATTGGAAGAACGTACCATATCAACCTGGTCAGGCTCTATGGCTTCTGCTTCGACCCCACCATGCGAGCTCTCGTCTACGAGTATGTGGAGAATGGTTCCCTGGACAGGCTCTTGTTCGGTGAGAACAAGGCAACTAATGATCAATGGGGAAAGTTTGAAGAAATTGCAGTCGGGACAGCGAAAGGAATCGCATACCTCCATGAAGAGTGTCGGCAGAGAATCATCCACTACGATATAAAACCTGCAAATGTTCTTCTCGATGCAGTTTTCTCTCCAAAATTGGCAGATTTCGGACTAGCAAAGCTCTGTAACAGGGACAGCACCCAGGTCCCCGTGACGGGCTTTCGAGGGACGCCGGGATACGCCGCACCGGAGCTCTGGAAGCCGTATCCGGTCACCTGCAAGTGTGACGTGTACAGCTTTGGTATGCTTCTATTCGAAATGGTCGGACGGAGAAGAAACCATGACGCTAGTCTGAGCGAGACCCGACAATGGCTTCCAAGATGGACGTGGGAAATGTTTGAGAAGAATGAATTACCAGAGATGCTGTCACTTTGTGGGATCAAAGAAACTAACATAGAGAAAGCAGGGAGAATGTGCATGGTGGCTATGTGGTGTGTTCAGTATTTACCTGAAGCAAGGCCTACAATGGGGAAGGTGGTGAAGATGCTGGAGGGGGAGACTGAGATTCCCCCACCTCCATATCCATTTCAACGTTCTATGCCAAATTTGGTGTCATCAAGTGGAAATAGTGAAGACACAGATCCTTCAGAATCTACTAGGGAAACATCAGAGCCATCTTATGCTGCTCCTGGGGAAGGAGTATTGGAGATAGAGATAGTCAGCTAG 1476 0.4763 MTRSFKTADEIWFFSPSSLSSDEVANAFNSIQQSGNPSEDVFNSFQKSVDSTFKWTVVASIFSSVVVVVAVVAVVLALIDCLKKTGTAIPKFARISSKDDDEPFNKTSMEDTQKVQDAVPSGYPIISDSQLKTGTMEIFLSEMEREKPTRFSPQQLARFTSDFSMVLGSGGFGVVYKGEFPNGLPVAVKVINSNSEKKVAEQFMAEVASIGRTYHINLVRLYGFCFDPTMRALVYEYVENGSLDRLLFGENKATNDQWGKFEEIAVGTAKGIAYLHEECRQRIIHYDIKPANVLLDAVFSPKLADFGLAKLCNRDSTQVPVTGFRGTPGYAAPELWKPYPVTCKCDVYSFGMLLFEMVGRRRNHDASLSETRQWLPRWTWEMFEKNELPEMLSLCGIKETNIEKAGRMCMVAMWCVQYLPEARPTMGKVVKMLEGETEIPPPPYPFQRSMPNLVSSSGNSEDTDPSESTRETSEPSYAAPGEGVLEIEIVS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0135 491 Gene3D Transferase(Phosphotransferase) domain 1 238 439 - -
Vvi16g0135 491 Gene3D Phosphorylase Kinase; domain 1 137 237 - -
Vvi16g0135 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Vvi16g0135 491 MobiDBLite consensus disorder prediction 449 463 - -
Vvi16g0135 491 ProSitePatterns Protein kinases ATP-binding region signature. 167 189 IPR017441 GO:0005524
Vvi16g0135 491 FunFam Putative receptor-like protein kinase 238 440 - -
Vvi16g0135 491 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 50 445 - -
Vvi16g0135 491 ProSiteProfiles Protein kinase domain profile. 161 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0135 491 SMART serkin_6 161 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0135 491 Pfam Protein kinase domain 165 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0135 491 SUPERFAMILY Protein kinase-like (PK-like) 138 434 IPR011009 -
Vvi16g0135 491 MobiDBLite consensus disorder prediction 440 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0135 Vvi-Chr16 1799021 1800588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0135 150 462 Receptor kinase-like Gene Family AT1G66980 41.925 6.69e-76 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Vvi16g0135 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0135 - - vvi:100244326 952.97