Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0133 ATGAGCTTTGAAGATCTTGAATGGGGTCGGACCAGGCCAGGCCAAAGCCCTTTGGCCTTGGCAACAAAGAGGCGGGAAGAGGATGACTCTTCACAGGCCGTGGCGGCAGGCGTTTTCAGAATCAACACTGCCGTTTCGGCCTTCTATCGCCTTGTCAATTCGCTTGGGACTCCCAAGGACACGCTCGAGCTCCGTGAAAAGCTGCACAAGACAAGGCTACATATTGGGCAGTTGGTGAAAGATACTTCAGCAAAGCTTAAGCAAGCAAGTGAAAATGATCAGCATACTGAAGTTAGCGCTAGCAAGAGGATTGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCAGTTCTTAAGGAATTTCAAAAGGCTCAAAGGCTTGCAGTTGAGAGGGAGACGGCATATACTCCTTTTGTTCCCAAGGAAGTTCTGCCATCCAGTTATGATGCACGCGAGCTGGAGATAAGTTCAGGGAAGAATCTCGAGCAACAAGCTGTTCTTTTGGAATCTAGAAGACAGGAAGTTGTGTTATTGGACAATGAGATCACCTTCAATGAAGCCATAATTGAAGAAAGAGAGCAAGGAATCCAAGAAATTCAGCAACAGATTGGTGAGGTGAATGAAATTTTCAAAGATCTGGCTGTACTGGTCCACGGACAAGGAACTATGATTGATGACATTAGTTCAAACATCGAGAAATCCCATGCTGCAACTGGACAAGCTTCTACCCAACTGGAGAAAGCATCCAAACTCCAAAAATCTAATTCCTCTCTGAGCTGTTTGCTGCTGGTGATTTTCGGGGTAATTCTGATCATTGTGGTCATAGTTGTGGTAGCATGA 837 0.4564 MSFEDLEWGRTRPGQSPLALATKRREEDDSSQAVAAGVFRINTAVSAFYRLVNSLGTPKDTLELREKLHKTRLHIGQLVKDTSAKLKQASENDQHTEVSASKRIADAKLAKDFQAVLKEFQKAQRLAVERETAYTPFVPKEVLPSSYDARELEISSGKNLEQQAVLLESRRQEVVLLDNEITFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHGQGTMIDDISSNIEKSHAATGQASTQLEKASKLQKSNSSLSCLLLVIFGVILIIVVIVVVA* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0133 278 SMART SynN_4 19 132 IPR006011 GO:0016020
Vvi16g0133 278 FunFam Syntaxin-22 like 178 278 - -
Vvi16g0133 278 Gene3D - 20 138 - -
Vvi16g0133 278 SMART tSNARE_6 180 247 IPR000727 -
Vvi16g0133 278 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 185 247 IPR000727 -
Vvi16g0133 278 SUPERFAMILY t-snare proteins 29 240 IPR010989 GO:0016020|GO:0016192
Vvi16g0133 278 MobiDBLite consensus disorder prediction 1 27 - -
Vvi16g0133 278 Pfam SNARE domain 221 273 IPR000727 -
Vvi16g0133 278 ProSitePatterns Syntaxin / epimorphin family signature. 191 230 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi16g0133 278 Gene3D - 178 278 - -
Vvi16g0133 278 FunFam Syntaxin-22 like 25 138 - -
Vvi16g0133 278 Pfam Syntaxin-like protein 35 134 IPR006011 GO:0016020
Vvi16g0133 278 PANTHER SYNTAXIN 31 270 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0133 Vvi-Chr16 1769725 1773997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0133 1 266 SNARE and Associated Proteins AT5G46860 70.301 1.46e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0133 - K08488 vri:117934289 466.848