LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0132	ATGGCGGCGTCTTCGGCAATCTCCTCGGCAGCGTCGATCTCGAATCTGCCGCCGCCGTTCCTCAGCAAGACCTACGACATGGTAGACGATCGGGCCACCGACTCGGTGGTATCGTGGAGTAGCGGCAACAACAGCTTTGTTGTCTGGAATGTTCCGGAGTTCTCTAGAGACCTTTTGCCCAAGTACTTCAAGCACAATAATTTCTCCAGCTTTGTGAGGCAGTTGAATACTTATGGATTTAGGAAGGTGGATCCAGACCGCTGGGAATTTGCAAATGAGGGTTTTCTAAGAGGTCAAAAACACCTTTTGAAGAGTATTAGTAGGCGAAAATCCACTCATGTACATACTCATAATCAACAACTACAACAACAACAACAACAACAACAACAAACTCAAGTGCAAAGCTCATCGGGAGCATGTGTTGAGGTAGGGAAGTTTGGGCTTGAAGAAGAGGTTGAGCGGCTTAAAAGAGATAAGAATGTTCTTATGCAAGAACTTGTTAGGTTGAGGCAGCAGCAGCAAACAACTGATCACCAGTTGCAAACTGTTGGGCAGCGTGTTCAAGATATGGAGCAACGGCAGCAACAAATGATGTCATTCCTTGCAAAAGCTGTACAAAGCCCTGGTTTCTTAGCTCAGCTGGTACAGCAGCAGAATGATAGCAAAAGGCGCATTACAGGTGTCAATAAGAAAAGGAGACTTCCAAAGCAGGAGGAAGAGATCCATTCTGCTAAGCATGCTACCACTGCTCCAGATGGGCGGGTTGTCAAGTACCAGCCTCTAATGAATGAGGCTGCAAAAGCAATGTTGCGACAGATCTTGAAGATGAATGCGACTCCAAGGCGAGAGCCTTCCATTAACCCTGATGCTTTCCTAATTGATGATGTTCCATCCTCCAATGCATTAGATAGTTTGAGCTCATCAAGTCGGGTTTCAGGAGTGACCCTTGCAGAAGTTCCACTAACATCTGGTCAGTCTTACTTGCCAGTGGAGTCAGCATATTCATCCAATCATCTATCAGCTGGCATCTCTGAGACCCAGTCTTCCCCCACTGTCATGACTGACTCAGTAAAAGCAGCTCAATTCCCAGAAGTCAATGTACCTAATTCTCAGGAAGATACTGTCTTGACTGACTTCACTCAAATGGAAGGAATCATTCCAGAAAGCACGGTTGAAATCCCTAATGTTGGCATGGTTGGCACTGAAACTGGGAGTCCAGGGTATATGGATCCAATGGCAGGCATTTTAGATGGGGTAGTTCCTGCAGAAACTGATGAGTTCTCGCTTGATTCCAATGTAGATAGCTTGCTGGATGGGATACCCAAGCTTCCCAGCATTAATGATGCTTTCTGGGAACAGTTTCTTGCAGCAAGCCCACTCACTGGTGACACAGATGAGATTCATTCAAGCATGCTGGAAGATAATGTGGTCAATGTACATGAGTTACAGCCAGGGGTGAACGGATGGAATAATACCCAGCATATGGATCATCTTACAGAACGAATGGGCCTTCTTGCATCAAAGGCCAAGGGGATGTGA	1539	0.4626	MAASSAISSAASISNLPPPFLSKTYDMVDDRATDSVVSWSSGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKSTHVHTHNQQLQQQQQQQQQTQVQSSSGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDHQLQTVGQRVQDMEQRQQQMMSFLAKAVQSPGFLAQLVQQQNDSKRRITGVNKKRRLPKQEEEIHSAKHATTAPDGRVVKYQPLMNEAAKAMLRQILKMNATPRREPSINPDAFLIDDVPSSNALDSLSSSSRVSGVTLAEVPLTSGQSYLPVESAYSSNHLSAGISETQSSPTVMTDSVKAAQFPEVNVPNSQEDTVLTDFTQMEGIIPESTVEIPNVGMVGTETGSPGYMDPMAGILDGVVPAETDEFSLDSNVDSLLDGIPKLPSINDAFWEQFLAASPLTGDTDEIHSSMLEDNVVNVHELQPGVNGWNNTQHMDHLTERMGLLASKAKGM*	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0132	512	PRINTS	Heat shock factor (HSF) domain signature	20	43	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0132	512	PRINTS	Heat shock factor (HSF) domain signature	58	70	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0132	512	PRINTS	Heat shock factor (HSF) domain signature	71	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0132	512	FunFam	Heat shock transcription factor 1	13	110	-	-
	Vvi16g0132	512	SUPERFAMILY	"Winged helix" DNA-binding domain	17	109	IPR036390	-
	Vvi16g0132	512	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	14	310	IPR027725	-
	Vvi16g0132	512	ProSitePatterns	HSF-type DNA-binding domain signature.	59	83	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0132	512	MobiDBLite	consensus disorder prediction	116	133	-	-
	Vvi16g0132	512	Pfam	HSF-type DNA-binding	20	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0132	512	SMART	hsfneu3	16	109	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0132	512	Gene3D	-	13	110	IPR036388	-
	Vvi16g0132	512	MobiDBLite	consensus disorder prediction	108	133	-	-
	Vvi16g0132	512	Coils	Coil	145	172	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0132	Vvi-Chr16	1762792	1766229	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0132	18	510	HSF	AT5G16820	55.600	7.97e-164	471

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vvi16g0132		HSF_DNA-bind	9.2e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0132	K09419		-	vvi:100254514	942.184