Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0126 ATGGCCGGTCAATCTGATCCTTACATATCCCTCTTTTCTGCCCAGGAGGTGGAATTTCTTGGCGAAGATGAAATGGTGGAGATTGTTCCCAATATGAGAATGGATCCCCTGAATTTGATCTGTGGGGATTTTGGGCCTTTCAGGCCACAAATAGCTACTCAAGTTCCGTTGTGGCTTGCAGTGGCTTTGAAGAAACGAGGGAAATGCACCATTCGGCCCCCTGAATGGATGTCAGTTGATAAGTTGACACAGGTTTTGGAAGCAGAGCGAAACTCTCTAAGAGAATTTCAGCCACTTCCATTCCATTATGTTGAAATCGCAAGACTTCTTTCTGACCATGCACGTGATGACATTCCTGATGTTTATATGGTAAGGTCTCTCATTGAAGACATCAGGAATGTAAGGTTTCATAAAGTTGAGACTGGGTTAGAGACAATCCATGAGCGCACACATGCAGTGAAGCTTAAAAATTTATCTGCGATGGAAGCAAATATAGTGCGCCCATTTGTTGTGAGAGCCCTGCAGGCATTTTATAAGCACGATAGTCCAGAGATGATACCACAACCAGATACCACGGCTATTAGAAGGCGGCAAGTAGCTGATCGTGGACCAAAACGGGATCGACGATACTAA 633 0.4471 MAGQSDPYISLFSAQEVEFLGEDEMVEIVPNMRMDPLNLICGDFGPFRPQIATQVPLWLAVALKKRGKCTIRPPEWMSVDKLTQVLEAERNSLREFQPLPFHYVEIARLLSDHARDDIPDVYMVRSLIEDIRNVRFHKVETGLETIHERTHAVKLKNLSAMEANIVRPFVVRALQAFYKHDSPEMIPQPDTTAIRRRQVADRGPKRDRRY* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0126 210 CDD GINS_B_Psf2 13 74 - -
Vvi16g0126 210 Gene3D - 12 77 - -
Vvi16g0126 210 FunFam DNA replication complex GINS protein PSF2 78 193 - -
Vvi16g0126 210 SUPERFAMILY GINS helical bundle-like 73 181 IPR036224 -
Vvi16g0126 210 PANTHER DNA REPLICATION COMPLEX GINS PROTEIN PSF2 7 205 IPR007257 GO:0005634|GO:0006260
Vvi16g0126 210 MobiDBLite consensus disorder prediction 195 210 - -
Vvi16g0126 210 Pfam GINS complex protein 53 162 IPR021151 -
Vvi16g0126 210 PIRSF GINS_PSF2 2 210 IPR007257 GO:0005634|GO:0006260
Vvi16g0126 210 Gene3D - 78 188 - -
Vvi16g0126 210 SUPERFAMILY PriA/YqbF domain 12 71 - -
Vvi16g0126 210 MobiDBLite consensus disorder prediction 185 210 - -
Vvi16g0126 210 CDD GINS_A_psf2 66 182 - -
Vvi16g0126 210 FunFam DNA replication complex GINS protein PSF2 12 77 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0126 1 148 Core DNA Replication Machinery Family AT3G12530 74.324 2.50e-79 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0126 K10733 - vvi:100264816 426.017