Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0124 ATGATGGCAAGACCAGAGGAGCAGAGACCGCGATGGACCGAAGAAGAAGACCATAAGCTCATTGAATGTAAAAGCAGAAATCCCCATCTATCTTGGCCAAATATCGCAATGCTGGCAGGGCTGGAGAGGAGTGGCAAGAGTTGTAGGGAGAGGTGGAATAACAGTCTGACGGAAGACAATACCATCACTCGCCTGCAGCGGCTTTATGGGAATAGATTCACAAGAACTCGTCAACCCTTGCTTCAGAAGCCTAGCTACCTAGAATTTCTTAGGGATGATGAGATTATCGATCACTCTGTCGAGGGAGATGAGCTTGAGTCTTTGATTGCCGAGTTTGGTTCTTTGATTCCCAACGTTAATCCAAATGAGACCAATTTCGGCGGAGATTACTTTGAGCCTTGGATTTCTGGACCGGTTTCAGCCTAG 426 0.4718 MMARPEEQRPRWTEEEDHKLIECKSRNPHLSWPNIAMLAGLERSGKSCRERWNNSLTEDNTITRLQRLYGNRFTRTRQPLLQKPSYLEFLRDDEIIDHSVEGDELESLIAEFGSLIPNVNPNETNFGGDYFEPWISGPVSA* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0124 141 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi16g0124 141 Gene3D - 4 56 - -
Vvi16g0124 141 Pfam Myb-like DNA-binding domain 9 54 IPR001005 -
Vvi16g0124 141 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Vvi16g0124 141 SUPERFAMILY Homeodomain-like 9 76 IPR009057 -
Vvi16g0124 141 SMART sant 8 58 IPR001005 -
Vvi16g0124 141 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 74 - -
Vvi16g0124 141 CDD SANT 11 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0124 Vvi-Chr16 1682656 1683273 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0124 12 75 MYB Transcription Factor Family AT1G57560 40.000 1.30e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0124 Myb_DNA-binding 1.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0124 K09422 - vvi:109124145 175.252