Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0122 ATGATGGCAAGACCACAGGAGCAGAGACGGCTATGGACCCCAGAAGAAGACGATAGGCTCATAGAATTTAAGCGCAACTACCCCTATCGACCTTGGCCAGGTACCGCAGATCTGGCAGGGCTGGACAGGAGTGATAAGAGTTGTTGGGAGAGGTGGAAAAACCATCTGAAGTCTGGTGTCAACAAAGAGAACTTCTCCGAAGAGGAAGATGACATCATCATCCGCATCCAGCGAACGGAGCATAGGAATGAGTGGGCATTTATGGCAAAAGAATATCTTCAAGGGCGAACCGCTAATGCTATCAAGAACCGTTGGAACAACCATTTGGAGAAGATGCTTACGAATATAAGTGACGTTGGGCGATACCTTCTCACGGATGATGAGACTAGTGATCACTCTGCCCGGGAAGATGAAGATGACGTTACGTCTGTGGTGGCCGAATATGCTTCTTTGATTTAG 459 0.4815 MMARPQEQRRLWTPEEDDRLIEFKRNYPYRPWPGTADLAGLDRSDKSCWERWKNHLKSGVNKENFSEEEDDIIIRIQRTEHRNEWAFMAKEYLQGRTANAIKNRWNNHLEKMLTNISDVGRYLLTDDETSDHSAREDEDDVTSVVAEYASLI* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0122 152 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Vvi16g0122 152 Gene3D - 8 62 - -
Vvi16g0122 152 CDD SANT 12 56 IPR001005 -
Vvi16g0122 152 CDD SANT 64 109 IPR001005 -
Vvi16g0122 152 ProSiteProfiles Myb-like domain profile. 57 109 IPR001005 -
Vvi16g0122 152 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Vvi16g0122 152 Pfam Myb-like DNA-binding domain 12 70 - -
Vvi16g0122 152 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi16g0122 152 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 113 IPR017930 -
Vvi16g0122 152 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 126 - -
Vvi16g0122 152 Gene3D - 63 141 - -
Vvi16g0122 152 SMART sant 8 58 IPR001005 -
Vvi16g0122 152 SMART sant 61 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0122 Vvi-Chr16 1621715 1622277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0122 8 150 MYB Transcription Factor Family AT3G27920 37.762 7.53e-23 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0122 Myb_DNA-bind_6 8.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0122 K09422 - vvi:104882004 261.151