Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0121 ATGGAAACACCACAGCAGACGAGTGGGTTGGAGACACGGCCATGGACCAAAGAAGAAGACCAGAAGCTCTTTGAATGTAAAAGCAAAAATCGCCATCTATCTTGGCCAGAAATCGCAATGCTGACAGAGCTAGAGAGGAGTCGTAAGAGATGTAGGGAAAGAAATCCCGATCTACATCGCCCAGATATCCCAACGCTGGCAGGGCTGAGCAGGAGTGGTAAGAGTTGTACGGAGAGGTGGAATAACCATCTGGATCCTAACGTCAAGAGAGAGAACTTCTCCCAAGAGGAAGACGACGCCATCATCTGCTTCCAGTCGCTCTATGGGAATAGCTGGGAGAGTATAGCAGCTCATCTTCCAGGGCGAACCGATAATGATGTGAAGAACCGCTGGTACAACCATTTGAAGAAGAAGAAGATTGGGAAAAGGAAATCCATGATGGCAAGACCAAAGGAGCAGAGACAGCGATGGACCGAAGAAGAAGACCATAAGCTCATTGAATGTAAAAGCAGACATCCCCATCTATCTTGGCCAAATATCGCAATGCTGGCAGGGCTGGAGAGGAGTGGCAAGAGTTGCAGGGAGAGGTGGAATAACAGTCTGACGGAAGACAATACCATCACCCGCCTGCAGTTACTTTATGGGAATAGCAAAAAAATCATCTTCCAGGGCCAACCGCTGGAACAACCATGTGAAGAAGAAGCTTGGGATAAGTACTCATCAGAATATTCCCGACCCACAAAGCTCTTTCGTCTGAACCAGAATATTCCAAACGCAAGCTCCATTCCTACACCCATTTCAGCCTCACAAGATATCGCCAACCCTTGGTTCACTTCTGAAGCCTACCTGGAATTTCTTGGGGATGATGAGACTACCCATCACTCTTTGATTGCCGGGTTTGCTCCTTTGATTCCCAAAGTTCATCCAAATGTGACCAATTTCGGGGGAGATTACTTTGAGCCTTAG 966 0.4762 METPQQTSGLETRPWTKEEDQKLFECKSKNRHLSWPEIAMLTELERSRKRCRERNPDLHRPDIPTLAGLSRSGKSCTERWNNHLDPNVKRENFSQEEDDAIICFQSLYGNSWESIAAHLPGRTDNDVKNRWYNHLKKKKIGKRKSMMARPKEQRQRWTEEEDHKLIECKSRHPHLSWPNIAMLAGLERSGKSCRERWNNSLTEDNTITRLQLLYGNSKKIIFQGQPLEQPCEEEAWDKYSSEYSRPTKLFRLNQNIPNASSIPTPISASQDIANPWFTSEAYLEFLGDDETTHHSLIAGFAPLIPKVHPNVTNFGGDYFEP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0121 321 ProSiteProfiles Myb-like domain profile. 7 84 IPR001005 -
Vvi16g0121 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Vvi16g0121 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 205 IPR017930 -
Vvi16g0121 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Vvi16g0121 321 SMART sant 89 137 IPR001005 -
Vvi16g0121 321 SMART sant 153 203 IPR001005 -
Vvi16g0121 321 SMART sant 11 86 IPR001005 -
Vvi16g0121 321 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Vvi16g0121 321 Gene3D - 153 200 - -
Vvi16g0121 321 Gene3D - 6 55 - -
Vvi16g0121 321 SUPERFAMILY Homeodomain-like 70 138 IPR009057 -
Vvi16g0121 321 ProSiteProfiles Myb-like domain profile. 149 201 IPR001005 -
Vvi16g0121 321 CDD SANT 14 54 IPR001005 -
Vvi16g0121 321 MobiDBLite consensus disorder prediction 52 74 - -
Vvi16g0121 321 CDD SANT 92 135 IPR001005 -
Vvi16g0121 321 Pfam Myb-like DNA-binding domain 154 199 IPR001005 -
Vvi16g0121 321 Pfam Myb-like DNA-binding domain 90 135 IPR001005 -
Vvi16g0121 321 CDD SANT 156 201 IPR001005 -
Vvi16g0121 321 Gene3D - 61 89 - -
Vvi16g0121 321 SUPERFAMILY Homeodomain-like 13 63 IPR009057 -
Vvi16g0121 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 153 204 - -
Vvi16g0121 321 Gene3D - 91 152 - -
Vvi16g0121 321 SUPERFAMILY Homeodomain-like 153 222 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0121 Vvi-Chr16 1606168 1613487 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0121 157 216 MYB Transcription Factor Family AT3G02940 45.070 1.16e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0121 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0121 K09422 - vvi:109124145 377.096