Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0120 ATGGCAAGACCACAGGAGCAGAGACGGCCATGGACCCTAGAAGAAGACAATAAGCTCAAAGAATTTAAGCTCAAATTCCCTAATGAATCTTGGGGAAAGATCGCAGAGCTGGCGGAGCTGGACAGGACTGATAAGAGGTGTTGGGAGAGGTGGAATAACTATCTGAAGCCTGGTATCAACAAAGCGGACTTCTCTAAAGAGGATGATAACATCATCATCCACCAAATGTCGCTTCCTCAGAATAGCTGGGCATCTATGGCAAAATATCATCTTCTTGGGCGATCTCATAATGATATCAAGAATCGCTGGAACAACCACTTGAAGAAGAGGCAAGCGACTATAAGTGACCTTAGGCAACACCTTCTCTACCTAGAGGAACAACTTCTCATGGATGATGAGACTAGTGATTACTCTGTCCGCGGGGATGACCTTGAGGCTTTGGTGGCCGAGTTTGCTTCTTTGATTCCCAACGTTGATCCAAATGCAAAGTCATCGGAGCGCTCTATGACTAATCAAGTAGAAAAAGTGGTCACCCCACCAGATGAAGAGATCTCCCCTTTGGAAGCCTGGCTAGAAGAATTTCTCTCTGGGGAGACTGGTGAGACTGGTGAGACTGGTGACTCTTTTTGCGGAGACACTGCACTCGTGTAG 651 0.4685 MARPQEQRRPWTLEEDNKLKEFKLKFPNESWGKIAELAELDRTDKRCWERWNNYLKPGINKADFSKEDDNIIIHQMSLPQNSWASMAKYHLLGRSHNDIKNRWNNHLKKRQATISDLRQHLLYLEEQLLMDDETSDYSVRGDDLEALVAEFASLIPNVDPNAKSSERSMTNQVEKVVTPPDEEISPLEAWLEEFLSGETGETGETGDSFCGDTALV* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0120 216 SMART sant 7 57 IPR001005 -
Vvi16g0120 216 SMART sant 60 109 IPR001005 -
Vvi16g0120 216 SUPERFAMILY Homeodomain-like 7 103 IPR009057 -
Vvi16g0120 216 Pfam Myb-like DNA-binding domain 11 69 - -
Vvi16g0120 216 CDD SANT 64 107 IPR001005 -
Vvi16g0120 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 111 IPR017930 -
Vvi16g0120 216 MobiDBLite consensus disorder prediction 197 216 - -
Vvi16g0120 216 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Vvi16g0120 216 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 140 - -
Vvi16g0120 216 Gene3D - 62 127 - -
Vvi16g0120 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 59 IPR017930 -
Vvi16g0120 216 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Vvi16g0120 216 CDD SANT 10 55 IPR001005 -
Vvi16g0120 216 Gene3D - 2 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0120 Vvi-Chr16 1601861 1603695 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0120 7 110 MYB Transcription Factor Family AT1G34670 45.192 2.30e-24 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0120 Myb_DNA-bind_6 5.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0120 K09422 - vvi:104882002 341.658