Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0118 ATGGCAAAACATCCGCGGCTCTTTGACGAGTCCGAAGTTGAATCCTCGCTCGGTACGAGCCTTGAGCTCGTCCAAATTCCCGTCGATGACGCTCTAGCTGCGGCAGTGGGAGAGGCGGGTGTCATTACTCTCATGACGATGCTGTGCTTCGTCGCTGTAGCATCACAGGAACATGGGCGGAATGGGTTGAAGAAGAGTCCATGGACTCCTAAAGAAGATCAGAAACTGATTCGATACATGAAGAGACATGGTGAGCCTACACGGTGGACGGAGGTCCCAAAGCTTGCGAGGCTGAACAAGTGTGGGAAGAGTTGTCGATTGAGGTGGAGCCAGTATCTGAAGCCTGGTATCAAGCGAGGGAACTTCTCTCAAGACGAAGAAGACACCATCATCAGACTTCAATCTGATCATGGCAATAGTTTGAAGAAGAAGCTTGCGAAAAAGGAAATTCCCCCTGCCACTCAGACACCGTTGTTCCAACCGTTACTAGCTGCTGCTGTTTTTTTGGATTCTTGTGTGAATTATATAAGGGCCTATGCCCTGAGGTTGCACTCAGATGCACGGCTACCCAATCCTCAGCCCCATGGAGTTGGCTTCATTTCAACAAACCCTACGGGCGCTTTCCCCGCTCAAGGACCTGGTTTCAATTATCAGGCTATGGAAGACCCAACAGTTTACTATCCAGACCAGTTTGGCCCTTTGAATACCAGTTTTCTAAATACGATTCCTTTCCCACAACTTAACCAAAACTATGCAGGCCATGTTGGCTCTTTATTTGGGAATATCCCCCCTACCACTCAGACACCGATACAACCGTTACTCGCAGTTGCTGATTGGTTGGCTTCTATTACTGCTTATGTGAGGAGCTATGCCCCGGGGTTGCACTCAGATGCACAACTACCCAATCTTCACTCGCTGCATAACCCAGTAGTACAGCAGGGCTTCGGTGACATTACACCCGATCCTGAGGCTCAGCTCCATGGAGTCGGTTCCATTTCAATAGACCCTGCGGGGGCTCTCCCCGGTCAAGGACCCGGTTTCAATTACCTGGCTATGGAGGACCCAACAGTTTACAGCCATCCAGACCAGTTTGGTCCTTTGATTACCAGTATTCCAAATACGGGGGTTTTGATTCCTGACCCAAAAGTTAACAACAACTATGCAGCCGATATTGGCTCTTTGTTTGGGAATGTTCCAAATGCAGGTTCGACTCCTGCACTGATGGTTTCAGAGTCATCAGAGCGCTCTATGACTAATCAAGTGGAAAATGAGATGACCCCACCAACTGAAGAGATCTCCCCTTTGGAAGCCTGGCTAGAAGAATTTCTCTTTGGGGAGAATGATGAGACTAGTGACTCTTTTTGCGAAGACGTTGCACTCGTGTTGTAA 1389 0.4896 MAKHPRLFDESEVESSLGTSLELVQIPVDDALAAAVGEAGVITLMTMLCFVAVASQEHGRNGLKKSPWTPKEDQKLIRYMKRHGEPTRWTEVPKLARLNKCGKSCRLRWSQYLKPGIKRGNFSQDEEDTIIRLQSDHGNSLKKKLAKKEIPPATQTPLFQPLLAAAVFLDSCVNYIRAYALRLHSDARLPNPQPHGVGFISTNPTGAFPAQGPGFNYQAMEDPTVYYPDQFGPLNTSFLNTIPFPQLNQNYAGHVGSLFGNIPPTTQTPIQPLLAVADWLASITAYVRSYAPGLHSDAQLPNLHSLHNPVVQQGFGDITPDPEAQLHGVGSISIDPAGALPGQGPGFNYLAMEDPTVYSHPDQFGPLITSIPNTGVLIPDPKVNNNYAADIGSLFGNVPNAGSTPALMVSESSERSMTNQVENEMTPPTEEISPLEAWLEEFLFGENDETSDSFCEDVALVL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0118 462 SUPERFAMILY Homeodomain-like 67 140 IPR009057 -
Vvi16g0118 462 ProSiteProfiles Myb-like domain profile. 60 113 IPR001005 -
Vvi16g0118 462 CDD SANT 67 113 IPR001005 -
Vvi16g0118 462 FunFam - 59 118 - -
Vvi16g0118 462 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 117 IPR017930 -
Vvi16g0118 462 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 60 140 - -
Vvi16g0118 462 SMART sant 64 115 IPR001005 -
Vvi16g0118 462 Gene3D - 56 118 - -
Vvi16g0118 462 Pfam Myb-like DNA-binding domain 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0118 Vvi-Chr16 1565617 1569034 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0118 60 193 MYB Transcription Factor Family AT1G34670 43.210 2.22e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0118 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0118 K09422 - vri:117921048 512.301