Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0117 ATGATGGCAAGACTACGGAAGCAGAGGCGGCCATGGACTAAAGAAGAAGACCAGAAGCTCATTGACTGTATAACTAGTAATGACCATCTAAGTTGGCCAGATATCGCAATGCAGGCAGGGCTGGAGAGGAGTGGTAAGAGTTGTAGGGAGAGGTGGAATAACTGTGTGAGTCCTCGTGTCAAGAGAGGGAACTTCTCCCAAGAGGAAGACGACACCATTATCCGCCTCCAGTGTGTTCATGGGAATAGGTGGGCATATATAGCTACTCAGCTTCCAGGGCGAAGCGATAATGCTATTAAGAACCGCTGGAACAACTACTTGAAGAAGAAGTCTGCGATAAGTACTCTTCAGAATATTTCTGACACACAGCTCTTTCATCTCAACCAGAATATTCCAAACTCAAGCTCGATCCCTACACCCATTTCAGCCTTACAAGAAATCGCCAACCCTTGGTTCATTTCTGATGAAGCCAACCAAGAATTTCTTAGGGGTGATGAGATTATCCATCACTCTTTGATTGCCGGGTTTACTTCTTTCATTCCCAACGTTAATCCAAATGAGACCAATTTCGGAGGAGATTACTTTGAGCCTTGGATTTCTGGACCGGCTTCAGCCTCAGTGGAGTACGCGCTCATGCCAACCGAACGAATCACCAGAAATTGGTCTCCTTTATTTGAAGCTTGGCCAGAACTTACCGACTAA 702 0.4587 MMARLRKQRRPWTKEEDQKLIDCITSNDHLSWPDIAMQAGLERSGKSCRERWNNCVSPRVKRGNFSQEEDDTIIRLQCVHGNRWAYIATQLPGRSDNAIKNRWNNYLKKKSAISTLQNISDTQLFHLNQNIPNSSSIPTPISALQEIANPWFISDEANQEFLRGDEIIHHSLIAGFTSFIPNVNPNETNFGGDYFEPWISGPASASVEYALMPTERITRNWSPLFEAWPELTD* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0117 233 Gene3D - 8 62 - -
Vvi16g0117 233 CDD SANT 11 54 IPR001005 -
Vvi16g0117 233 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Vvi16g0117 233 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Vvi16g0117 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Vvi16g0117 233 Pfam Myb-like DNA-binding domain 9 54 IPR001005 -
Vvi16g0117 233 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Vvi16g0117 233 CDD SANT 64 107 IPR001005 -
Vvi16g0117 233 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 119 - -
Vvi16g0117 233 Gene3D - 64 110 - -
Vvi16g0117 233 SMART sant 61 109 IPR001005 -
Vvi16g0117 233 SMART sant 8 58 IPR001005 -
Vvi16g0117 233 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Vvi16g0117 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0117 Vvi-Chr16 1530423 1531206 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0117 8 110 MYB Transcription Factor Family AT5G16770 56.311 1.10e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0117 Myb_DNA-binding 8.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0117 K09422 - vvi:104882000 475.707