Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0116 ATGATGGTAAGACCAGAGGAGCAGACACCGCGATGGACCACCAAAGAAGAAGACCAGAGGGTTTTTGAATGTCAATGCAGAAATCCCGATCCAGATATCGCAACGCTGACAGGGCTGAGCGGGAGTGGCAAGAGTTGTAGGGAGAGGTGGAATAACGATCTGGATTCTAATGTCCAGAGAGGGAACTTCTCCCAAGAGGAAGACGACGCCATCATCTGCTTCCAGTCGCTCTATGGGAATTGCTGGGAAAGTATAGCAGCTCATCTTCCAGGGCGAACCGATAATGATGTCAAGAACCGCTGGGGAGATTACTTTGAGTTTGAGCCCACACAACTCTTTCATCTCAACCACAATATTGATCCAAACGCAAGCTCAAGCTTGATTCCTACACCGGTTTCAACCTCTCAAGAAATTGCCAACCCTTGGTCCACTTCTGAATTAGCCTACCCAGAATTTCCAAGGGGTATCTCCCGAGTGATGATGAGACTATCCATGACTCTTTCGGGGGAGATTACTTTGGGTTTGAGCCCACACAACTCTTTGATTTCAACCACAATATTGATCCAAATGCAAGCTCAGGCTCGATTCCTCCACCGGTTTCAACCTCTCAAGAAATTGCCAACCCTTGGTCCACTTCTGAATTAG 645 0.4775 MMVRPEEQTPRWTTKEEDQRVFECQCRNPDPDIATLTGLSGSGKSCRERWNNDLDSNVQRGNFSQEEDDAIICFQSLYGNCWESIAAHLPGRTDNDVKNRWGDYFEFEPTQLFHLNHNIDPNASSSLIPTPVSTSQEIANPWSTSELAYPEFPRGISRVMMRLSMTLSGEITLGLSPHNSLISTTILIQMQAQARFLHRFQPLKKLPTLGPLLN* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0116 214 SMART sant 59 107 IPR001005 -
Vvi16g0116 214 SUPERFAMILY Homeodomain-like 42 106 IPR009057 -
Vvi16g0116 214 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vvi16g0116 214 Pfam Myb-like DNA-binding domain 60 104 IPR001005 -
Vvi16g0116 214 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 33 102 - -
Vvi16g0116 214 CDD SANT 62 101 IPR001005 -
Vvi16g0116 214 Gene3D - 61 139 - -
Vvi16g0116 214 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0116 Vvi-Chr16 1498813 1499797 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0116 14 135 MYB Transcription Factor Family AT1G35515 41.600 1.37e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0116 Myb_DNA-binding 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0116 K09422 - vri:117933897 283.108