Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0115 ATGATACCAGAGGAGCAGACACCGCGATGGACCACCGAAGAAGAAGACCAGAGGGTCTTTGAATGTCAAAGCAGAAATCCCGATCTACATTGGCCAGATATCGCAACGCTGACAGGGCTGAGCGGGAGTGGTAAGAGTTATAGGGAGAGGTGGAATAACGATCTGGATCCTAATGTCCAGAGAGGGAACTTCTCCCAAGAGGAAGACGACGCCATCATCTGCTTCCAGTCGCTCTATGGGAATTGCTGGGAAAGTATAGCAGCTCATCTTCCAGGGCGAACCGATAATGATGTCAAGAACCGCTGGTACAGCCATTTGAAGAAGCAGCCTTGGAGAAGTACTGATGAGAATATTCTTGACCCACAAAGTAGCACCAGGGATCGCCCACATGCCACACAACTCTTTCATCTCAACCACAATATTGATCCAAACACAAGCTTAAGCTCGATTCCTACACCAGTTTCAGCCTCACAAGAAATCGTCAACCCTTGGTCCACTTCTGAATTAGCCTACCCAGAATTTCCAGGGGATATCTTCTGA 540 0.4833 MIPEEQTPRWTTEEEDQRVFECQSRNPDLHWPDIATLTGLSGSGKSYRERWNNDLDPNVQRGNFSQEEDDAIICFQSLYGNCWESIAAHLPGRTDNDVKNRWYSHLKKQPWRSTDENILDPQSSTRDRPHATQLFHLNHNIDPNTSLSSIPTPVSASQEIVNPWSTSELAYPEFPGDIF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0115 179 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 126 - -
Vvi16g0115 179 CDD SANT 63 106 IPR001005 -
Vvi16g0115 179 Gene3D - 8 60 - -
Vvi16g0115 179 SUPERFAMILY Homeodomain-like 43 110 IPR009057 -
Vvi16g0115 179 Gene3D - 63 133 - -
Vvi16g0115 179 ProSiteProfiles Myb-like domain profile. 2 55 IPR001005 -
Vvi16g0115 179 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vvi16g0115 179 SMART sant 60 108 IPR001005 -
Vvi16g0115 179 SMART sant 6 57 IPR001005 -
Vvi16g0115 179 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vvi16g0115 179 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0115 Vvi-Chr16 1482488 1483101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0115 4 109 MYB Transcription Factor Family AT5G40330 48.113 6.23e-26 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0115 Myb_DNA-binding 3.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0115 K09422 - vvi:109124143 387.111