Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0114 ATGGGGAGAGCTTCCCTGGTTTTTTTCGCAGTCATTGTATTTATTTATTTGTTTTCATGTAGTATATTTCATGGAAGCAGCTTTATTGGGTTAATTTCTTCCATCTCTGCAGGGAAATCCGTAATGGAAACACCACAGCAGACGAGTGGGTTGGAGACACGGCCATGGACCAAAGAAGAAGACCAGAAGCTCTTTGAATGTAAAAGCAAAAATCGCCATCTATCTTGGCCAGAAATCGCAATGCTGACAGAGCTAGAGAGGAGTCGTAAGAGATGTAGGGAAAGACCAGAGGAGCAGAGACCGCGATGGACCGAAGAAGAAGACCGGATGCTCTTTGAATGTAAAGGCAGAAATTTGGATCTACCTTGGCCAGATATCGCAGAGCTGGCAGGGCTGAGCAGGAGTGGTAAGAGTTGTAGGGATAGGTGGAAAAACCATCTGGATCCTAATGTCAAGAGAGGGAACTTCTCCCAAGAGGAAGACGAAACCATCATCCGCCTCCATTCAAGTCATGAGAATAGCATCTGGAGAGCGAGTTCATGCCAACTGGAGAACAGGAGTGGTAAGAGTTGTAGGGAGAGGTGGAAAAACCACCTGGATTCTAATGTCAAGAGAGGGAACTTCTCCCAAGAGGAAGACGAAACCATCATCCGCCTCCATTCAAGTCATGGGAATAGCTGGGCATTTATAGCAACTCATCTTCCAGGGCGAACCGATAATGCTCTCAAGAACCGCTGGAACCACCATTTGAAGAATAAGCTAATTGGGAGAGAGGATAAGTTAGGGCTTTTGGGGTTTTCAGAATCAAAGGAAAAAGAGGCAGAGAGGTTTCGGAATGAGAGGAGGAGGTTAGGGGTGTTTCGGTTTTCCTAG 873 0.4628 MGRASLVFFAVIVFIYLFSCSIFHGSSFIGLISSISAGKSVMETPQQTSGLETRPWTKEEDQKLFECKSKNRHLSWPEIAMLTELERSRKRCRERPEEQRPRWTEEEDRMLFECKGRNLDLPWPDIAELAGLSRSGKSCRDRWKNHLDPNVKRGNFSQEEDETIIRLHSSHENSIWRASSCQLENRSGKSCRERWKNHLDSNVKRGNFSQEEDETIIRLHSSHGNSWAFIATHLPGRTDNALKNRWNHHLKNKLIGREDKLGLLGFSESKEKEAERFRNERRRLGVFRFS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0114 290 CDD SANT 155 199 IPR001005 -
Vvi16g0114 290 SUPERFAMILY Homeodomain-like 102 174 IPR009057 -
Vvi16g0114 290 CDD SANT 207 250 IPR001005 -
Vvi16g0114 290 CDD SANT 55 95 IPR001005 -
Vvi16g0114 290 CDD SANT 102 147 IPR001005 -
Vvi16g0114 290 Gene3D - 152 205 - -
Vvi16g0114 290 ProSiteProfiles Myb-like domain profile. 48 94 IPR001005 -
Vvi16g0114 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 102 177 - -
Vvi16g0114 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Vvi16g0114 290 Pfam Myb-like DNA-binding domain 103 162 - -
Vvi16g0114 290 Pfam Myb-like DNA-binding domain 205 250 IPR001005 -
Vvi16g0114 290 ProSiteProfiles Myb-like domain profile. 148 199 IPR001005 -
Vvi16g0114 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 254 IPR017930 -
Vvi16g0114 290 Gene3D - 101 151 - -
Vvi16g0114 290 Gene3D - 47 95 - -
Vvi16g0114 290 Gene3D - 206 283 - -
Vvi16g0114 290 SMART sant 52 98 IPR001005 -
Vvi16g0114 290 SMART sant 99 149 IPR001005 -
Vvi16g0114 290 SMART sant 204 252 IPR001005 -
Vvi16g0114 290 SMART sant 152 201 IPR001005 -
Vvi16g0114 290 SUPERFAMILY Homeodomain-like 51 95 IPR009057 -
Vvi16g0114 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 199 IPR017930 -
Vvi16g0114 290 ProSiteProfiles Myb-like domain profile. 200 250 IPR001005 -
Vvi16g0114 290 SUPERFAMILY Homeodomain-like 182 253 IPR009057 -
Vvi16g0114 290 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0114 Vvi-Chr16 1412237 1428570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0114 11 257 MYB Transcription Factor Family AT3G09370 32.157 1.61e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0114 Myb_DNA-bind_6 3.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0114 - K09420 vvi:104881998 406.757