Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0113 ATGGCAGCATCACAGGGACATGGGCGGAATGGGCTGAAGAAGAGTCCATGGACTCCTAAAGAAGATCAGAAACTGATTCGATACATGAAGAGACATGGTGAGCCTACACGGTGGACGGAGGTCCCAAAGCTTGCGAGGCTGAACAGGTGTGGGAAGAGTTGTAGATTGAGGTGGAGCCAGTATTTGAAGCCCGGTATCAAGCGAGGGAACTTCTCTCAAGACGAAGAGGACACCATCATCAGACTTCAATCTGCTCATGGCAACAGGTGGGTATTTATAGCCACTCAACTTCCAGGCCGGACTGACAGTGAAATCAAGAACTATTGGAACACCAGTTTGAAGAAGAAGCTTGCGAAAAAGGAAATTCCCCCTGCCACTCAGACACCGTTGTTCCAACCGTTACTAGCTGCTGCTGTTTTTTTGGATTCTTGTGCGAATTATATAAGGGACTATGCCCTGAGGTTGCACTCAGATGCACGACTACCCAATCCTCAGCGCCATGGAGTTGGCTTCATTTCAACAGACCCTACGGGCGCTTTCCCCGCTCAAGGACCTGGTTTCAATTATCAGGCTATGGAGGACCCAACAGTTTATTATCCAGACCAGTTTGGCCCTTTGATTACCAATTTTCTAAATACGATTCCTTTCCCACAACTTAACCAAAACTATGCAGGCCATGTTGGCTCTTTACTTGGGAATATCCCCCCTGCCACTCAGACACCGATACAACCGTTACTCCCAGTTGCTGATTGGTTGGCTTCTACTGCTGCTTATCTAAGGAGCTATGCCCCGGGGTTGCACTCAAATGCACAGCTACCCAATCTTCACTCGCTGCATAACCCAGTAGTACAGCAGGGCTTCGGTGACATTACACCCGATCCTGAGGCTCAGCTCCATGGAGTCGGTTCCATTTCAACAGACGCTGCGGGGGCTCTCCCCGGTCAAGGACCCGGTTTCAATTACCAGGCTATGGAGAACCCAACAGTTTACAATCATCCAGACCAGTTTGGTCATTTGATTACCAGTATTCCAAATATGGGGGTTTTGATTCCTGACCCAAAAGTTAACAACAACTATGCAGCCGATCTTGGCTCTTTGTTTGGGAATGTTCCAAATGCAGGTTCGACTCCTGCACTGATGGTTTCAGAGTCATCAGAGCGCTCTATGACTAATCAAGTGGAAAATGAGATGACCCCACCAACTGAAGAGATCTCCCCTTTGGAAGCCTGGCTAGAAGAATTTCTCTCTGCGGAGAATGGTGAGACTAGTGACTCTTTTTGCGGAGACGTTGCACTCGTGTAG 1302 0.4862 MAASQGHGRNGLKKSPWTPKEDQKLIRYMKRHGEPTRWTEVPKLARLNRCGKSCRLRWSQYLKPGIKRGNFSQDEEDTIIRLQSAHGNRWVFIATQLPGRTDSEIKNYWNTSLKKKLAKKEIPPATQTPLFQPLLAAAVFLDSCANYIRDYALRLHSDARLPNPQRHGVGFISTDPTGAFPAQGPGFNYQAMEDPTVYYPDQFGPLITNFLNTIPFPQLNQNYAGHVGSLLGNIPPATQTPIQPLLPVADWLASTAAYLRSYAPGLHSNAQLPNLHSLHNPVVQQGFGDITPDPEAQLHGVGSISTDAAGALPGQGPGFNYQAMENPTVYNHPDQFGHLITSIPNMGVLIPDPKVNNNYAADLGSLFGNVPNAGSTPALMVSESSERSMTNQVENEMTPPTEEISPLEAWLEEFLSAENGETSDSFCGDVALV* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0113 433 MobiDBLite consensus disorder prediction 1 20 - -
Vvi16g0113 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vvi16g0113 433 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vvi16g0113 433 Pfam Myb-like DNA-binding domain 68 111 IPR001005 -
Vvi16g0113 433 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi16g0113 433 CDD SANT 16 62 IPR001005 -
Vvi16g0113 433 FunFam - 7 67 - -
Vvi16g0113 433 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vvi16g0113 433 Gene3D - 70 129 - -
Vvi16g0113 433 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vvi16g0113 433 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vvi16g0113 433 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 132 - -
Vvi16g0113 433 SMART sant 13 64 IPR001005 -
Vvi16g0113 433 SMART sant 67 115 IPR001005 -
Vvi16g0113 433 CDD SANT 70 113 IPR001005 -
Vvi16g0113 433 Gene3D - 8 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0113 Vvi-Chr16 1395608 1396988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0113 1 129 MYB Transcription Factor Family AT1G34670 61.240 1.93e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0113 Myb_DNA-binding 2.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0113 K09422 - vri:117921048 573.933