Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0112 ATGAGGGGAAGAGCACAGAAGCAGAAAGGTCAGGAGAGAGTTCGATGGTCACCGGATGAAAACAAGAGACTTGATGAATATATGGAGAGACATGGTGAGACTAGCTCCTGGAAAAATGTCCCAACGCGTGCAGGGCTGAGCAGGAGTCCGAAGAGTTGTAGGCTAAGGTGGGCAACTATTGCAAAGCACCTGCCAGGGAGAACGGATACTGGGATCAAGAATTTCTGGAATAACCATCTGAAGAAGAAGCTTTCAAAAAAGGAGACTCCGAGCCTTGTCACTCAGACACCATGGCACCAGCTTCTTGACACTGCTGATTTGTTGACTTGTGCTTTGAATGATCCCAGGGATGAAGTCCGCAAGTTGCACTCAGATGCCAGCTTTGCATGGAATCCTCGGCATGGACATGGATTCCATCCAACAGATGAGGAGCTTCTCACTCCCCTTCTCCTCTTCCTCCTCAAACACCCAGTTTCAATTACCAGCAGACTATGGAGGACCCACAAGTTTCTACCAGGAACCCAGATGGGATCGGTTCTAGGCCTGCGAGTATTCCAAATGCAAGTTCCATTCCTGCGCCGGTTTCAGCCTCACTGGAGCCCTCCAAGGCCGATCAAGTAG 621 0.5008 MRGRAQKQKGQERVRWSPDENKRLDEYMERHGETSSWKNVPTRAGLSRSPKSCRLRWATIAKHLPGRTDTGIKNFWNNHLKKKLSKKETPSLVTQTPWHQLLDTADLLTCALNDPRDEVRKLHSDASFAWNPRHGHGFHPTDEELLTPLLLFLLKHPVSITSRLWRTHKFLPGTQMGSVLGLRVFQMQVPFLRRFQPHWSPPRPIK* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0112 206 CDD SANT 15 80 IPR001005 -
Vvi16g0112 206 Gene3D - 4 58 - -
Vvi16g0112 206 SMART sant 12 82 IPR001005 -
Vvi16g0112 206 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 84 IPR017930 -
Vvi16g0112 206 MobiDBLite consensus disorder prediction 1 33 - -
Vvi16g0112 206 ProSiteProfiles Myb-like domain profile. 8 61 IPR001005 -
Vvi16g0112 206 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 56 113 - -
Vvi16g0112 206 MobiDBLite consensus disorder prediction 1 45 - -
Vvi16g0112 206 Pfam Myb-like DNA-binding domain 13 58 IPR001005 -
Vvi16g0112 206 SUPERFAMILY Homeodomain-like 13 81 IPR009057 -
Vvi16g0112 206 Gene3D - 59 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0112 Vvi-Chr16 1371466 1372265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0112 2 84 MYB Transcription Factor Family AT5G10280 40.000 5.19e-19 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0112 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0112 K09422 - vvi:104882090 261.536