Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0111 ATGGCGAGATCACCGGAGGAGAGTGGCCTGAAGAAGGGGCCATGGACGCCGGAAGAAGACCAGAAACTCGTTGAGTATATACAGAGACATGGGCATGGAAGCTGGAGAGCTCTCCCAAAGCTTGCCGGACTGAACAGGTGTGGGAAGAGTTGTAGACTGAGGTGGACAAACTATCTGAGGCCTGATATCAAGAGAGGAAAATTCTCTGATGAAGAAGAGAACACCATCATCAACCTCCACTCGGTTCTCGGCAACAAGTGGTCAGCCATAGCTACTCATCTTCCCGGGAGAACAGATAATGAAATCAAGAACTTCTGGAACACCCATCTGAAGAAGAAGCTTATGCAAATGGGGATTGATCCGGTCACTCACAGACCGAGAACTGACCTTAACATCCTCGCTAATTTACCTCAGTTGCTTGCAGCAGCCAATTTGAGTACTTCTCTCGTGAATAATCCTTGGGACAATGCCCTCAGACTGCAGTCAGATGCCACCCAACTAGCCAAACTCCACTTGCTGCATAACCTACTGCAAGTTCTAGGCACCAGTCCCACTGCTCTTCCCCCAAACATGGAAGCAGGCAACCTCTTTGGAACACCATCTTTTATGGACCATCAAGCCTACGAGTACCCTACCTCAAATCCTCAGCTCAATGGACTAATTGGTCTCCACCCAACAGACCCGGCTCAGACTCTTTCAAGTATTCCTAGCTTTGTCCCTCCTCAAGAACCCGGTTTCGAGTACCAGACCATGGAGAACTCAAAAGTTTGTGCCGGGAACAACAATGATGGAGATGAACTCGGCTCTTTATATGCCATTCCTGCATTGGTTTCGGCCTCACCTGAGCCATCCACAGTGAATCAAAAGGAGAAGAAGATCGAACCGGCTCATGACATCTCCAATCCTTCATCCACTTCAACAACCTTTGAAGCCTGGGGAGAACTCATGGATGATGAAGCAAGTGACTCTTACTGGAGAGACCTTATAGACCAAGCTTCATCTTCGCCATGGCCAATCTCATCATAA 1026 0.4854 MARSPEESGLKKGPWTPEEDQKLVEYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEENTIINLHSVLGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLMQMGIDPVTHRPRTDLNILANLPQLLAAANLSTSLVNNPWDNALRLQSDATQLAKLHLLHNLLQVLGTSPTALPPNMEAGNLFGTPSFMDHQAYEYPTSNPQLNGLIGLHPTDPAQTLSSIPSFVPPQEPGFEYQTMENSKVCAGNNNDGDELGSLYAIPALVSASPEPSTVNQKEKKIEPAHDISNPSSTSTTFEAWGELMDDEASDSYWRDLIDQASSSPWPISS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0111 341 Gene3D - 67 114 - -
Vvi16g0111 341 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Vvi16g0111 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Vvi16g0111 341 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Vvi16g0111 341 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Vvi16g0111 341 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Vvi16g0111 341 Gene3D - 11 64 - -
Vvi16g0111 341 CDD SANT 67 110 IPR001005 -
Vvi16g0111 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 241 - -
Vvi16g0111 341 FunFam Transcription factor MYB39 67 128 - -
Vvi16g0111 341 CDD SANT 14 59 IPR001005 -
Vvi16g0111 341 FunFam MYB-related transcription factor 11 64 - -
Vvi16g0111 341 SMART sant 64 112 IPR001005 -
Vvi16g0111 341 SMART sant 11 61 IPR001005 -
Vvi16g0111 341 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Vvi16g0111 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0111 Vvi-Chr16 1339759 1341016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0111 1 330 MYB Transcription Factor Family AT5G16770 51.549 1.06e-109 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0111 Myb_DNA-binding 3.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0111 K09422 - vvi:100251104 687.952