Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0101 ATGATGGCAAGACCAGAGAGGCCGCGATGGACAGAAGTAGAAGATTGGGTGCTCTTTGAATGTAAAACAAAAAATATGGATCTACCTTGGCCAGATATCGCAAAGCTGACAGAACTGGACAGAAGTGGCAAAAATTGCAGAGAGAGGTGGAAGTACCACCTGGATCCTGATGTCAAGATGGAGAATTTCTCCCAAGAGGAAGACGATTCCATCGTCTGCTTCCAGTCGCTCTATGGGAATAGCTGGTCTAGTATTGCGGCTCATCTTCCTGGGCGAACCGATAATGATGTCAAGAATCGCTGGTACAACCATTTGAAGAAGCAGCAGCTTGGGAGAAGTACCGGGGATCAGCAACATATCGATCCAAATGCAAGCCCAAGCTCGATTCCTACACTGGTTTCAGCCTCACAAGAAATAGCCAGCACTTGGTCCATTTCTGGATTAGCCTCTCTGGAGGGCGAGTTCACGCCAACTGAAGAAGTCTTCAAATTTTGGTCTGCTTGA 504 0.4742 MMARPERPRWTEVEDWVLFECKTKNMDLPWPDIAKLTELDRSGKNCRERWKYHLDPDVKMENFSQEEDDSIVCFQSLYGNSWSSIAAHLPGRTDNDVKNRWYNHLKKQQLGRSTGDQQHIDPNASPSSIPTLVSASQEIASTWSISGLASLEGEFTPTEEVFKFWSA* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0101 167 ProSiteProfiles Myb-like domain profile. 2 54 IPR001005 -
Vvi16g0101 167 SUPERFAMILY Homeodomain-like 8 54 IPR009057 -
Vvi16g0101 167 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 125 - -
Vvi16g0101 167 Pfam Myb-like DNA-binding domain 62 105 IPR001005 -
Vvi16g0101 167 SMART sant 59 107 IPR001005 -
Vvi16g0101 167 SMART sant 6 56 IPR001005 -
Vvi16g0101 167 SUPERFAMILY Homeodomain-like 38 111 IPR009057 -
Vvi16g0101 167 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vvi16g0101 167 CDD SANT 62 105 IPR001005 -
Vvi16g0101 167 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vvi16g0101 167 Gene3D - 8 59 - -
Vvi16g0101 167 Gene3D - 61 127 - -
Vvi16g0101 167 CDD SANT 9 54 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0101 Vvi-Chr16 1220602 1221189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0101 3 149 MYB Transcription Factor Family AT4G09460 38.776 1.12e-27 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi16g0101 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0101 K09422 - vvi:104881995 354.369