Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g0097 | ATGCGCTGCGGCGAGTCGCAGAGGTCGTATAAGGGGAGGCATTGCAAGAAGTTCTACACAGAAGAAGGGTGTCCGTATGGAGATAGTTGTACATTCTTGCACGATGAACAGTCCAGGGCGAGGGAGAGCGTGGCTATAAGCTTGAGCCCAACGGTGGGCGGTGGCGGGTACGGAAGCAGCGGCGCCAATGGGCCGAACCAGAAACCGTCAAATTGGAAGACAAGGATATGCAATAAGTGGGAGACCACGGGCAGCTGCCCATTTGGAAACAAGTGCCATTTTGCACATGGAGTTGCAGGAAGTCTGGGGAGGAAGAAAGGGGGTGGTGTACCAGGGAAGTGA | 342 | 0.5497 | MRCGESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSRARESVAISLSPTVGGGGYGSSGANGPNQKPSNWKTRICNKWETTGSCPFGNKCHFAHGVAGSLGRKKGGGVPGK* | 114 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g0097 | 113 | ProSiteProfiles | Zinc finger C3H1-type profile. | 71 | 99 | IPR000571 | GO:0046872 | |
Vvi16g0097 | 113 | SMART | c3hfinal6 | 9 | 36 | IPR000571 | GO:0046872 | |
Vvi16g0097 | 113 | SMART | c3hfinal6 | 71 | 98 | IPR000571 | GO:0046872 | |
Vvi16g0097 | 113 | MobiDBLite | consensus disorder prediction | 53 | 72 | - | - | |
Vvi16g0097 | 113 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 50 | 98 | IPR045877 | GO:0003729 | |
Vvi16g0097 | 113 | FunFam | Zinc finger, CCCH-type | 3 | 41 | - | - | |
Vvi16g0097 | 113 | MobiDBLite | consensus disorder prediction | 49 | 72 | - | - | |
Vvi16g0097 | 113 | FunFam | zinc finger CCCH domain-containing protein 15-like | 65 | 100 | - | - | |
Vvi16g0097 | 113 | ProSiteProfiles | Zinc finger C3H1-type profile. | 9 | 37 | IPR000571 | GO:0046872 | |
Vvi16g0097 | 113 | SUPERFAMILY | CCCH zinc finger | 69 | 98 | IPR036855 | GO:0046872 | |
Vvi16g0097 | 113 | Gene3D | - | 66 | 100 | - | - | |
Vvi16g0097 | 113 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 72 | 97 | IPR000571 | GO:0046872 | |
Vvi16g0097 | 113 | Pfam | CCCH-type zinc finger | 13 | 35 | IPR041367 | - | |
Vvi16g0097 | 113 | Gene3D | - | 2 | 52 | - | - | |
Vvi16g0097 | 113 | SUPERFAMILY | CCCH zinc finger | 8 | 37 | IPR036855 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi16g0097 | Vvi-Chr16 | 1187229 | 1191141 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi16g0097 | 73 | 98 | C3H Transcription Factor Family | AT1G68200 | 61.538 | 3.31e-08 | 48.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Vvi16g0097 | zf-CCCH | 1.5e-11 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g0097 | - | - | vvi:100256185 | 216.853 |