Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0097 ATGCGCTGCGGCGAGTCGCAGAGGTCGTATAAGGGGAGGCATTGCAAGAAGTTCTACACAGAAGAAGGGTGTCCGTATGGAGATAGTTGTACATTCTTGCACGATGAACAGTCCAGGGCGAGGGAGAGCGTGGCTATAAGCTTGAGCCCAACGGTGGGCGGTGGCGGGTACGGAAGCAGCGGCGCCAATGGGCCGAACCAGAAACCGTCAAATTGGAAGACAAGGATATGCAATAAGTGGGAGACCACGGGCAGCTGCCCATTTGGAAACAAGTGCCATTTTGCACATGGAGTTGCAGGAAGTCTGGGGAGGAAGAAAGGGGGTGGTGTACCAGGGAAGTGA 342 0.5497 MRCGESQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSRARESVAISLSPTVGGGGYGSSGANGPNQKPSNWKTRICNKWETTGSCPFGNKCHFAHGVAGSLGRKKGGGVPGK* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0097 113 ProSiteProfiles Zinc finger C3H1-type profile. 71 99 IPR000571 GO:0046872
Vvi16g0097 113 SMART c3hfinal6 9 36 IPR000571 GO:0046872
Vvi16g0097 113 SMART c3hfinal6 71 98 IPR000571 GO:0046872
Vvi16g0097 113 MobiDBLite consensus disorder prediction 53 72 - -
Vvi16g0097 113 PANTHER CCCH ZINC FINGER/TIS11-RELATED 50 98 IPR045877 GO:0003729
Vvi16g0097 113 FunFam Zinc finger, CCCH-type 3 41 - -
Vvi16g0097 113 MobiDBLite consensus disorder prediction 49 72 - -
Vvi16g0097 113 FunFam zinc finger CCCH domain-containing protein 15-like 65 100 - -
Vvi16g0097 113 ProSiteProfiles Zinc finger C3H1-type profile. 9 37 IPR000571 GO:0046872
Vvi16g0097 113 SUPERFAMILY CCCH zinc finger 69 98 IPR036855 GO:0046872
Vvi16g0097 113 Gene3D - 66 100 - -
Vvi16g0097 113 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 97 IPR000571 GO:0046872
Vvi16g0097 113 Pfam CCCH-type zinc finger 13 35 IPR041367 -
Vvi16g0097 113 Gene3D - 2 52 - -
Vvi16g0097 113 SUPERFAMILY CCCH zinc finger 8 37 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0097 Vvi-Chr16 1187229 1191141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0097 73 98 C3H Transcription Factor Family AT1G68200 61.538 3.31e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi16g0097 zf-CCCH 1.5e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0097 - - vvi:100256185 216.853