Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0096 ATGAAGCCCAAGAACAGAAGAATCATGGGAGCTGGAGGGCCAGTGGAAGAGGAAGGTGAGGAGGAGGTGGAGAGCAAGTGGCCGCCATGGCTGCGCCCTCTCCTCCAAACAAGCTTCTTCGTTCAATGCAAGCTCCATGCTGATTCCCACCGCAGTGAATGCAACATGTACTGCTTGGACTGCATGAATGGAGCCCTCTGCTCCCTTTGCCTCAACTTCCACAAAGATCACCGCGCTATTCAGATAAGGAGGTCATCATACCATGATGTGATTAGGGTTTCTGAGATTCAGAAATTTCTGGACATTACCGGAGTCCAGACCTACATTATCAACAGTGCCAGAATTGTGTTCTTGAATGAGAGGCCTCAGCCCAGGCCTGGAAAAGGAGTCACCAACACTTGCCAAGTTTGTGAGCGCAGCCTCCTTGACTCCTTCACTTTTTGCTCCCTTGGTTGCAAGATAGTTGGGACATCAAAGAGCTTCAGGAAGAAGAAGCTGTGCATGGAAACAGAAGGCTCCGACTCGGAATCCCTGAACGGAGCCAGCAGCGGCAGCGGCAGCAGCAGCAAGAGCAAAATCCCGAGCTTTACGCCCTCCACGCCGCCTCCCACCGCCGCCGCGACTTACCGGACGGCCAAGAGGAGGAAGGGAGTGCCCCACAGAGCCCCATTGGGAGCCCTTATCATACAGTACTGA 696 0.5374 MKPKNRRIMGAGGPVEEEGEEEVESKWPPWLRPLLQTSFFVQCKLHADSHRSECNMYCLDCMNGALCSLCLNFHKDHRAIQIRRSSYHDVIRVSEIQKFLDITGVQTYIINSARIVFLNERPQPRPGKGVTNTCQVCERSLLDSFTFCSLGCKIVGTSKSFRKKKLCMETEGSDSESLNGASSGSGSSSKSKIPSFTPSTPPPTAAATYRTAKRRKGVPHRAPLGALIIQY* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0096 231 MobiDBLite consensus disorder prediction 172 218 - -
Vvi16g0096 231 Pfam PLATZ transcription factor 83 154 IPR006734 -
Vvi16g0096 231 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 22 224 - -
Vvi16g0096 231 MobiDBLite consensus disorder prediction 172 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0096 Vvi-Chr16 1157784 1158933 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vvi16g0096 PLATZ 3.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0096 - - vvi:100261275 397.512