Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0092 ATGCAAATCCATAAGATGGATTACTACAAAGTTTTGGAGGTTGATTATGATGCAACTAATGAGAAGATCAAGTTAAATTACAGAAGGCTTGCACTGAAGTGGCATCCCGACAAGCATAAGGGTGACAATGCTGTTACAGAAAAATTTCAACTGATCAATGAAGCTTATAAAGTGTTGAGTGATCCTGCTAAACGACTTGACTATGATTTAACTGGAAACTATGAGATTGATAAGTACACTTTACGGGAATATCTTACCAGATTTAAAGGAATGATACTTACCTGCAATGGGCTTGGAATTAGTCACACATCCATATGGACACAACAACTGATGGACACCAATGATCATTCAGATAAATAA 360 0.3611 MQIHKMDYYKVLEVDYDATNEKIKLNYRRLALKWHPDKHKGDNAVTEKFQLINEAYKVLSDPAKRLDYDLTGNYEIDKYTLREYLTRFKGMILTCNGLGISHTSIWTQQLMDTNDHSDK* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0092 119 SUPERFAMILY Chaperone J-domain 3 97 IPR036869 -
Vvi16g0092 119 Pfam DnaJ domain 7 69 IPR001623 -
Vvi16g0092 119 PRINTS DnaJ domain signature 27 42 IPR001623 -
Vvi16g0092 119 PRINTS DnaJ domain signature 44 64 IPR001623 -
Vvi16g0092 119 PRINTS DnaJ domain signature 64 83 IPR001623 -
Vvi16g0092 119 PRINTS DnaJ domain signature 9 27 IPR001623 -
Vvi16g0092 119 CDD DnaJ 7 61 IPR001623 -
Vvi16g0092 119 Gene3D DnaJ domain 1 86 IPR036869 -
Vvi16g0092 119 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 104 - -
Vvi16g0092 119 FunFam Chaperone protein DNAj, putative 1 86 - -
Vvi16g0092 119 ProSiteProfiles dnaJ domain profile. 7 72 IPR001623 -
Vvi16g0092 119 SMART dnaj_3 6 64 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0092 Vvi-Chr16 1114459 1117985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0092 8 69 C2H2 Transcription Factor Family AT1G74250 40.299 5.99e-09 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0092 - - vvi:100244367 239.58