LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0088	ATGCAAGGGCCTGTGGACGAGACGGATTATGATATTCAGACCAATACGGCATCAGCTGAAAAGGGAAGTCGGAAAGCTTATATTAGGACAGAATCTGGGACCTGTAACGTGTGCTCCACTCCTTGCTCATCTTGCATGCATTTTAACCAAGCTCTCATGGGGTCAAAGTCTGATGAATCTTCTGATGAAAACTGCCGGGGAAATGCTGTTAGCCAGTATTCTGTTAATGATGTGCAACCTCCTTTTAAGAGTAGAACATGTGATAACTTACAAAATACTGCCAGTGAGATAAGTAATCTAGTCAGTGCTAATTCAAGTCATGATTCATTCTGTGAAAATGCTCAAAGTCAAGCAGCATTGGATGCGTCTGAAGATGTTGAGATGCTTCCAAGTGAAAATATTGTAGAGGATCACCTTGCTTCGGAACCAAAATGTGTTTCTGATCAAAGAAGCCTTCCAAATAAGTATGATGATCCAAAGGGTTTAGAAGTGCATGATGATAACATCTCATGTATTATTGAGAATAAAGATGAAAAGACCAGTTATAATGCTGACAGAAAATGTAGTGCAGGTTCAGTTAGTAGTGTTTGTCAAGAGGGATTTGGAAAGACTGTTCATTTTCAAACTGCCTCAGGCAGTCATGATGTCAGTGATATGAAAAAGAGCCATAATAACAGTGGGCAAGTGAGTTGTTATACTCAAGATTCTATTCAGAAGGTGCCTCCTAGTTTATCAACACCTTCAGAGGTTCCTTCCTTAAAAGATATTGATATTGGCACTGGCTCACAGGGCAGTGGATTGCCTTCCTGCAACCCAAAAGTTAAGGATTTGGAAGAGGATTTCTCTTCTCATCTCAAGGAAGAATTGCCCGAGTGCTCAATGGGGCATATGAATTCATCATCGACAAAAGAGGCAGCACTGAATGTTGTATCTGATGAGAAATCTGCTGGATATGACTCTGCTGATACTATTGCAAATAGTAAAACTAGTTTTATTGGAGGCAGTTCTGTGGTTTCAATTGAAGTTCATACAGACTTAGAAGTAGAGACTGACAAGGATGGTAAGGACAGGCCGACTGAAGCATTGAAATGTGTAGACCAAGATGAGGAGGTCAAGAAGTGCAATGAGTTGCCTAAGTTACCTGATATTGAGAAACCTTCTTTGCAATCTCAGCTTGTGGATGAGAGTGATGAATCAGACGTTGTGGAACATGATGTCAAAGTTTGTGATATCTGTGGAGATGCAGGTCGGGAGGATTTACTTGCTATTTGTAGTAGATGCAGTGATGGTGCTGAGCACACCTATTGCATGCGAGAAATGCTGGATAAAGTTCCAGAAGGTAATTGGATGTGTGAAGAATGCAGGTTTGAGAAGGAAATTGAAAACCAGAAGCAAGTGAAAGTTGAAATGGAGGGTACTGAGAAAAATCAACTTTCTGGACAAGCAAATGCTGTAAATGCTGATGTACTTGTGAAGTTGGATACAAAAGATTCAGATGTTGAGGGAAACAGTACCCACAAAGTTGTTTCAGGTACACAAGTCTCTGGTAAGAGACATGCTGAGAATACAGAAGTTGGTCCAGTGGTGAAAAGGCAGGCTGTTGAACTAAGCTCGGGATCGCCAAAGTCATCTAGCCCTAGCAGAATAGCTGCATTATCTCGGAATGGTTCATTCAAGAATTCAGATAAGGGGAAAGTTAGGCCAGTCCATCAAACGTCTTCTACCACACACTCCAGTGATATTCCGGAAACTGCACGATCTCCAACTGCAGGTCCACGACTTACACCTCGTGGTGCTTTGTTAAAGTCTAATTCTTTCAGCACTTCAAACACAAAACCAAAAGTGAAACCTGTAGAGGAAGTTCTTCCTGAAAAGCAGAAGAGGGTTAGGGAACCTGCTTCCCTTGATATGAAGGAGGGTGTTAGTAAAATGATGGGAAAATCCATGTCATTTAAATCCTCAGGCCGTTTAAATGCTACTGAATCAAAAGTTAAAATGCTCTCCCCTAATTTTTCTCATGTTCAGAATCCAAAAGGATTAAAACAGGCTATAGAACGAAACTCATTTGATAGGAAGAATTCGTTTAAATCAGAACGTACATTGGGTAGTTCAGCAATGGCTGGTTCTAGTGTTTCTACACCAAAGCCTGATCAAAAACCTGCATCTCGTGGCGAATCTGTTTCACTTTCTTCTATAAGCAATAACCGTGATTCGAAGGCTGTGCAGTCTGATGGGAAATTAACTTCTCCAAAGCCAACTTGCCATCCAAGTCGTAAAGGTTCAGAAATTCCAGTTACTTTAGTTAAGAGGCAGTCTTCTTCATCTACCAATGGAACATGCAGTTCTTCTGAACAGAAGCCTAACCATGCTAGCTTGAAGGATGAACCTTCATCAAATTCGTGGAACACTGAGAAATCTGTTCATGCTAATGAAACACCACAAGATGGGTCACCTTGGTCTCGGGAATCAACTAACCAGGGTGAGAAAACGAGAGAGACTTCTGTTAATCGCCCAAAGCAGAGTTCCACCACTGGTGGAAGAAATCTTCCCTGTGAAAAATGTAAAGAAATTGGTCATTCTTCGCAATCTTGCACAACTAGAAGTCCTCGGCCTTCTACTGTTGATGCATCAGCTGCAAAAAGTTCAAAAGAGTTGATGAACAAGGGTAATAAGTTGAAAGCTGCAATTGAAGCAGCCATGCTTAAAAGGCCTGGAATATACAAAAGGAACAAAGTTCTTGATCAATCTGATGAGGCTTCCTTGTCAAGCACAGATTTGAATGGTCAAATGGCTTCTCAAGATCAATTATCAATTTCGAGTAGTACAAAGAATATGGTTTCTGCTGAAGGAATGGATGAAGGGAAGGCAATAGTCCAGAATTATACTGTTGACTCTTCCAAACAAACAGCTGTCAACAACTTGAAGCAGCTTTCTGTGCTCCCTACTGGATCTGTATTCTCTTCCAAAGTGGGAGAAGTAGATTCTATTGTCCCTGCTGATGTAAAGCCTTCTATGAGAGACATTTCTAGTGATGCTTCCACTGCAGCTAATGTTCTTTGGAAGATGCCTGTCATTCCAGAGCATGAATATATTTGGCAAGGGGTTTTTGAAGTCCATAGAAGTGGAAAAGTGCCAGACTTATGTGGTGGAGTGCAAGCACACTTATCAACCTGTGCGTCACCTAAAGTTCTTGAAGTGGCAAATAAGTTTCCCCACAAGGTTCTCTTGAATGAAGTTCCTCGCTCGAGTATGTGGCCAGCCCAGTTTCAAGATTGCAGTGTTAAAGAAGATAACATTGGGCTCTATTTTTTTGCTAAAGATCTTGAAAGTTACGAGAGAAACTACAGGAGTTTGTTGGAGAGCATGATGAAGAATGATTTAGCTCTTAAAGGAAACATTGATGGTGTTGAACTCCTGATATTCCCATCCAACCAGCTTCCTGAGAAATCTCAGCGTTGGAATATGATGTTTTTCTTATGGGGTGTATTCAAAGGAAGGAGATTGAATTGCTCAGAACAGACATCTGGTTCTTCAAAGGTTGTCTGTATTCCTAGTTTGAATACAGTACCTGAGGATGATGATATTCCCAGCATTGCCATGACTTCATCTGAGAACACATGCTCACCTGAACGTATGGCTAAAGATGTAAACACATGTGACAGATCATGCGATGTAGACCTGTCATCCATGGCTCCTGCCTTAGTGGACATACCCTTTGTTTCATCATCTGAAACTGTAAATGGAAATCACAATACGAAAACACCTTCATGCGATGATAAGTGCTTAGGTTCACAAGAAAAAATGGAGCAGCAGGAGACCAAACTTGATGTCCACTTCTTGTCCAGGATTCCAACAGGCAGTTCACAGTTGTGCCCGGAAGTGAGATGCACCAGTACTTCCCTGAAAGAGCGTAGCGATCCAGATGGCAAACTGGAGTCGAAGCTTCAACCTTCTGTTCCATTAATTAAGATAGGAAGTGGTTCGAATAGAGTTGAGAAGTTGCCAGTGCATCGGGCCGCATCACTTGATAGGCAGGATGTTCTGCATCATCCTTTCAAGATGCTTCCCATTGGTTCTCAAGAGGTAGGTGTCATGAGGAGCATCAGTGAGGAGAAGCTACATGATAGAATGAGCAGCATCACGAGTCGAGCAAAATTTGAGATTGTCTTGATGGACGAAGATAGGGTTATGGACACAGAAGCTGATGGAGAGGGTTGGCAATTCAACACTAAACGGCCACGCTCTGATCCTACAGAGACAGTGTCACAACCTTCTTCTACTGGCACAAGTCAAGGATTGCCATGGAATACTGGGAATAGTATTTTGGTTGATGGAGAAAGTGAGCGCAAGAAACTGAAGACAAGTTATACTGGAGCATTTGTTTGTAACAGTTCTAGAAATACGAGTTCTTTGAGTGATGGTTTTGCATCACCCATAAACGATCCGGCTCCTGTTGTTCCACCTATCAATGAAAAAAGATTCTTTCCTGTAGATTTGCATCCTGTGAGGAACTTCCTCTTGGGGGATGACTCCATGCCTCGGAAAGCATTCTCACCAGAATATGAGGATCGACTTCATGATACAGTCCCAAATCTTGAGCTTGCCTTGGGGGCTGAAAAGAAACCATCAAAACAAGGGATCCTGCCTTGGTATCTTGGGAGTGCAGACAAGAAAACCGAGCAGGACAAGCCTCCTGATATGGTGACAATCAAGGAAGACGACGATGCAGCTTCTCTTTCCCTTTCTCTTTCCTTTCCAATCCCAGAGAAGGAACGAGCTGTGAAACCTGTCCCCAGAACTGAGCAGCTCCTTCCTGAAAGGCCCAATGTGAATACATCCTTCCTCCTATTTGGGAGGGGCTTCCCAGACAGTTAG	4875	0.423	MQGPVDETDYDIQTNTASAEKGSRKAYIRTESGTCNVCSTPCSSCMHFNQALMGSKSDESSDENCRGNAVSQYSVNDVQPPFKSRTCDNLQNTASEISNLVSANSSHDSFCENAQSQAALDASEDVEMLPSENIVEDHLASEPKCVSDQRSLPNKYDDPKGLEVHDDNISCIIENKDEKTSYNADRKCSAGSVSSVCQEGFGKTVHFQTASGSHDVSDMKKSHNNSGQVSCYTQDSIQKVPPSLSTPSEVPSLKDIDIGTGSQGSGLPSCNPKVKDLEEDFSSHLKEELPECSMGHMNSSSTKEAALNVVSDEKSAGYDSADTIANSKTSFIGGSSVVSIEVHTDLEVETDKDGKDRPTEALKCVDQDEEVKKCNELPKLPDIEKPSLQSQLVDESDESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLDKVPEGNWMCEECRFEKEIENQKQVKVEMEGTEKNQLSGQANAVNADVLVKLDTKDSDVEGNSTHKVVSGTQVSGKRHAENTEVGPVVKRQAVELSSGSPKSSSPSRIAALSRNGSFKNSDKGKVRPVHQTSSTTHSSDIPETARSPTAGPRLTPRGALLKSNSFSTSNTKPKVKPVEEVLPEKQKRVREPASLDMKEGVSKMMGKSMSFKSSGRLNATESKVKMLSPNFSHVQNPKGLKQAIERNSFDRKNSFKSERTLGSSAMAGSSVSTPKPDQKPASRGESVSLSSISNNRDSKAVQSDGKLTSPKPTCHPSRKGSEIPVTLVKRQSSSSTNGTCSSSEQKPNHASLKDEPSSNSWNTEKSVHANETPQDGSPWSRESTNQGEKTRETSVNRPKQSSTTGGRNLPCEKCKEIGHSSQSCTTRSPRPSTVDASAAKSSKELMNKGNKLKAAIEAAMLKRPGIYKRNKVLDQSDEASLSSTDLNGQMASQDQLSISSSTKNMVSAEGMDEGKAIVQNYTVDSSKQTAVNNLKQLSVLPTGSVFSSKVGEVDSIVPADVKPSMRDISSDASTAANVLWKMPVIPEHEYIWQGVFEVHRSGKVPDLCGGVQAHLSTCASPKVLEVANKFPHKVLLNEVPRSSMWPAQFQDCSVKEDNIGLYFFAKDLESYERNYRSLLESMMKNDLALKGNIDGVELLIFPSNQLPEKSQRWNMMFFLWGVFKGRRLNCSEQTSGSSKVVCIPSLNTVPEDDDIPSIAMTSSENTCSPERMAKDVNTCDRSCDVDLSSMAPALVDIPFVSSSETVNGNHNTKTPSCDDKCLGSQEKMEQQETKLDVHFLSRIPTGSSQLCPEVRCTSTSLKERSDPDGKLESKLQPSVPLIKIGSGSNRVEKLPVHRAASLDRQDVLHHPFKMLPIGSQEVGVMRSISEEKLHDRMSSITSRAKFEIVLMDEDRVMDTEADGEGWQFNTKRPRSDPTETVSQPSSTGTSQGLPWNTGNSILVDGESERKKLKTSYTGAFVCNSSRNTSSLSDGFASPINDPAPVVPPINEKRFFPVDLHPVRNFLLGDDSMPRKAFSPEYEDRLHDTVPNLELALGAEKKPSKQGILPWYLGSADKKTEQDKPPDMVTIKEDDDAASLSLSLSFPIPEKERAVKPVPRTEQLLPERPNVNTSFLLFGRGFPDS*	1625

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0088	1624	SMART	PHD_3	408	455	IPR001965	-
	Vvi16g0088	1624	PANTHER	-	406	1208	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	1411	1441	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	600	614	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	497	632	-	-
	Vvi16g0088	1624	SUPERFAMILY	FYVE/PHD zinc finger	394	464	IPR011011	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	858	884	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	567	585	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	670	886	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	766	824	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	617	632	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	7	21	-	-
	Vvi16g0088	1624	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	346	469	IPR013083	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	504	519	-	-
	Vvi16g0088	1624	ProSiteProfiles	Zinc finger PHD-type profile.	406	457	IPR019787	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	1	23	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	1400	1441	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	698	750	-	-
	Vvi16g0088	1624	MobiDBLite	consensus disorder prediction	536	559	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0088	Vvi-Chr16	1064686	1080868	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0088	405	497	C2H2 Transcription Factor Family	AT3G01460	28.571	1.67e-06	51.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0088	-		-	vri:117934240	3157.85