Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0085 ATGAACAGTGGAGGTGGGTCTGTTGGGGGGGCATCAATGGCAACAGGGATGATGGTGAGGTCATCACCATTCACAGTGTCTCAGTGGCAGGAGCTGGAGCATCAAGCTTTGATCTTTAAGTATCTAATGGCAGGACTACCCGTCCCACCTGATCTTGTGCTTCCTATTCAGAAGAGCTTTGAATCTATGTCTTCTAGGTTCTTCCACCATCCTACCATGGGTTACTGTTCCTTCTATGGGAAGAAGGTGGACCCGGAGCCAGGTAGATGCCGGAGGACTGATGGCAAGAAATGGAGGTGCTCCAAAGACGCCTACCCGGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTACTACACAGTCTTCTTCGACTGTGACTTCACTAACTGTCACTGGAGGCAGTGGCAGTGGAGCCGGGACCTTCCAGAACCTTCCCCTGCAAAACTTCAATAACCCCCAAGGCGGCCCGGGGTCCGGAACCAACCAATCCCAATTCCATATGGAGCCCATTCCCTATGGCATTCCTAATAAAGATTACAGGTACAGGTATCTTCATGGACTTAAACCCGAGGTAGGCGAACATAGTTTCTTCTCTGAAGCTTCAGGAAGCAACAGGGGTCTTCAGATGGACTCGCCTTTGGACAGCACATGGCCTCTGATGCCATCACGGGTCTCATCATTCCCCCCATCAAAATCAAGTGAAAACTCCATCTTGCAGAGTGACTACCCCCAGCATTCGTTCTTCAGCAGCGAATTTGCGTCGGGAGAGGTTGTGAAACAGGAGGGTCAGTCTCTCCGTCCTTTCTTTGACGAGTGGCCTAAAACCAGAGACTCCTGGTCCGGCCTTGAGGAAGAGAGGTCCAACCAGACCTCATTCTCCACAACCCAGCTCTCAATTTCGATCCCAATGGCCTCCTCTGACTTCTCAACAACCAGCTCTCGGTCTCCCCACGATAACTGA 999 0.5175 MNSGGGSVGGASMATGMMVRSSPFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFESMSSRFFHHPTMGYCSFYGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVESQTTTQSSSTVTSLTVTGGSGSGAGTFQNLPLQNFNNPQGGPGSGTNQSQFHMEPIPYGIPNKDYRYRYLHGLKPEVGEHSFFSEASGSNRGLQMDSPLDSTWPLMPSRVSSFPPSKSSENSILQSDYPQHSFFSSEFASGEVVKQEGQSLRPFFDEWPKTRDSWSGLEEERSNQTSFSTTQLSISIPMASSDFSTTSSRSPHDN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0085 332 MobiDBLite consensus disorder prediction 297 332 - -
Vvi16g0085 332 ProSiteProfiles QLQ domain profile. 23 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi16g0085 332 PANTHER GROWTH-REGULATING FACTOR 5 16 320 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vvi16g0085 332 MobiDBLite consensus disorder prediction 125 180 - -
Vvi16g0085 332 MobiDBLite consensus disorder prediction 283 332 - -
Vvi16g0085 332 MobiDBLite consensus disorder prediction 112 181 - -
Vvi16g0085 332 SMART QLQ_2 22 58 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi16g0085 332 Pfam QLQ 23 57 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vvi16g0085 332 Pfam WRC 85 127 IPR014977 -
Vvi16g0085 332 ProSiteProfiles WRC domain profile. 84 128 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0085 Vvi-Chr16 976015 979541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0085 12 127 GRF Transcription Factor Family AT3G13960 57.500 2.38e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vvi16g0085 WRC 2.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0085 - - vvi:100259737 616.69